Analysis of interatomic Contacts of Structural Units in PDB entry:
8QTV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QTV entry

There are 2 chains in PDB entry 8QTV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 899	PRO 1229
B	CYS 899	PRO 1229

There are 16 helices in PDB entry 8QTV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1026	1029	Right-handed 310
Helix 2	AA2	A	1057	1064	Right-handed alpha
Helix 3	AA3	A	1079	1084	Right-handed alpha
Helix 4	AA4	A	1087	1096	Right-handed alpha
Helix 5	AA5	A	1097	1102	Right-handed 310
Helix 6	AA6	A	1103	1108	Right-handed alpha
Helix 7	AA7	A	1112	1126	Right-handed alpha
Helix 8	AA8	A	1130	1150	Right-handed alpha
Helix 9	AA9	B	1026	1029	Right-handed 310
Helix 10	AB1	B	1057	1064	Right-handed alpha
Helix 11	AB2	B	1079	1084	Right-handed alpha
Helix 12	AB3	B	1087	1096	Right-handed alpha
Helix 13	AB4	B	1097	1102	Right-handed 310
Helix 14	AB5	B	1103	1108	Right-handed alpha
Helix 15	AB6	B	1112	1126	Right-handed alpha
Helix 16	AB7	B	1130	1150	Right-handed alpha

There are 8 sheets in PDB entry 8QTV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	918	920	first strand
Strand 2	A	910	912	anti-parallel
Strand 3	A	901	906	anti-parallel
Strand 4	A	1020	1024	anti-parallel
Strand 5	A	1010	1014	anti-parallel
Strand 6	A	1001	1006	anti-parallel
Strand 7	A	993	998	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	979	982	first strand
Strand 2	A	971	976	anti-parallel
Strand 3	A	959	968	anti-parallel
Strand 4	A	944	952	anti-parallel
Strand 5	A	926	932	anti-parallel
Strand 6	A	1032	1034	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1176	1179	first strand
Strand 2	A	1205	1208	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1216	1217	first strand
Strand 2	A	1224	1225	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	918	920	first strand
Strand 2	B	910	912	anti-parallel
Strand 3	B	901	906	anti-parallel
Strand 4	B	1020	1024	anti-parallel
Strand 5	B	1010	1014	anti-parallel
Strand 6	B	1001	1006	anti-parallel
Strand 7	B	993	998	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	979	982	first strand
Strand 2	B	971	976	anti-parallel
Strand 3	B	959	968	anti-parallel
Strand 4	B	944	952	anti-parallel
Strand 5	B	926	932	anti-parallel
Strand 6	B	1032	1034	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1176	1179	first strand
Strand 2	B	1205	1208	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1216	1217	first strand
Strand 2	B	1224	1225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QTV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QTV