Analysis of interatomic Contacts of Structural Units in PDB entry:
8QTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QTY entry

There is 1 chain in PDB entry 8QTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 57GLU 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 8QTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
126 146Right-handed alpha
Helix 2
AA2
A
156 166Right-handed alpha
Helix 3
AA3
A
201 211Right-handed alpha
Helix 4
AA4
A
217 239Right-handed alpha
Helix 5
AA5
A
242 253Right-handed alpha
Helix 6
AA6
A
266 273Right-handed alpha
Helix 7
AA7
A
274 279Right-handed 310
Helix 8
AA8
A
303 318Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8QTY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
151 155anti-parallel
Strand 3
A
60 68parallel
Strand 4
A
81 91anti-parallel
Strand 5
A
96 102anti-parallel
Strand 6
A
280 286parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
122 124anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
196 200anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
298 301anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il