Analysis of interatomic Contacts of Structural Units in PDB entry:
8QU8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QU8 entry

There are 6 chains in PDB entry 8QU8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 66	GLU 204
B	ASP 2	LYS 104
C	MET 17	CYS 112
D	SER 2	VAL 744
E	SER 15	GLU 102
F	GLY 0	LYS 169

There are 55 helices in PDB entry 8QU8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	157	170	Right-handed alpha
Helix 2	AA2	A	183	190	Right-handed alpha
Helix 3	AA3	A	193	200	Right-handed alpha
Helix 4	AA4	B	23	36	Right-handed alpha
Helix 5	AA5	B	62	67	Right-handed alpha
Helix 6	AA6	B	100	104	Right-handed 310
Helix 7	AA7	C	33	37	Right-handed alpha
Helix 8	AA8	C	39	47	Right-handed alpha
Helix 9	AA9	C	66	84	Right-handed alpha
Helix 10	AB1	C	96	98	Right-handed 310
Helix 11	AB2	C	99	111	Right-handed alpha
Helix 12	AB3	D	12	25	Right-handed alpha
Helix 13	AB4	D	26	28	Right-handed 310
Helix 14	AB5	D	31	47	Right-handed alpha
Helix 15	AB6	D	53	79	Right-handed alpha
Helix 16	AB7	D	82	105	Right-handed alpha
Helix 17	AB8	D	105	121	Right-handed alpha
Helix 18	AB9	D	127	134	Right-handed alpha
Helix 19	AC1	D	138	153	Right-handed alpha
Helix 20	AC2	D	154	168	Right-handed alpha
Helix 21	AC3	D	169	172	Right-handed 310
Helix 22	AC4	D	177	191	Right-handed alpha
Helix 23	AC5	D	200	207	Right-handed alpha
Helix 24	AC6	D	207	228	Right-handed alpha
Helix 25	AC7	D	231	254	Right-handed alpha
Helix 26	AC8	D	255	257	Right-handed 310
Helix 27	AC9	D	258	271	Right-handed alpha
Helix 28	AD1	D	274	281	Right-handed alpha
Helix 29	AD2	D	281	288	Right-handed alpha
Helix 30	AD3	D	290	304	Right-handed alpha
Helix 31	AD4	D	307	329	Right-handed alpha
Helix 32	AD5	D	336	357	Right-handed alpha
Helix 33	AD6	D	361	377	Right-handed alpha
Helix 34	AD7	D	386	396	Right-handed alpha
Helix 35	AD8	D	397	399	Right-handed 310
Helix 36	AD9	D	410	423	Right-handed alpha
Helix 37	AE1	D	427	446	Right-handed alpha
Helix 38	AE2	D	454	465	Right-handed alpha
Helix 39	AE3	D	465	495	Right-handed alpha
Helix 40	AE4	D	530	549	Right-handed alpha
Helix 41	AE5	D	610	616	Right-handed alpha
Helix 42	AE6	D	663	681	Right-handed alpha
Helix 43	AE7	D	682	691	Right-handed alpha
Helix 44	AE8	D	695	700	Right-handed alpha
Helix 45	AE9	D	701	708	Right-handed alpha
Helix 46	AF1	D	714	727	Right-handed alpha
Helix 47	AF2	E	38	42	Right-handed 310
Helix 48	AF3	E	54	58	Right-handed 310
Helix 49	AF4	E	84	91	Right-handed alpha
Helix 50	AF5	F	15	26	Right-handed alpha
Helix 51	AF6	F	65	74	Right-handed alpha
Helix 52	AF7	F	86	92	Right-handed alpha
Helix 53	AF8	F	92	105	Right-handed alpha
Helix 54	AF9	F	126	138	Right-handed alpha
Helix 55	AG1	F	151	169	Right-handed alpha

There are 6 sheets in PDB entry 8QU8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	110	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	147	152	parallel
Strand 4	A	129	130	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	117	121	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	3	9	parallel
Strand 4	B	12	18	anti-parallel
Strand 5	C	28	32	parallel
Strand 6	C	18	22	anti-parallel
Strand 7	C	60	61	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	511	first strand
Strand 2	E	27	32	parallel
Strand 3	D	554	555	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	78	79	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	46	first strand
Strand 2	F	49	57	anti-parallel
Strand 3	F	3	10	parallel
Strand 4	F	77	83	parallel
Strand 5	F	111	116	parallel
Strand 6	F	141	143	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QU8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QU8