Analysis of interatomic Contacts of Structural Units in PDB entry:
8QUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QUD entry

There are 4 chains in PDB entry 8QUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7PRO 463
B
 SER 7PRO 463
D
 SER 7PRO 463
C
 SER 7PRO 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 8QUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 28Right-handed alpha
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
41 46Right-handed alpha
Helix 4
AA4
A
60 74Right-handed alpha
Helix 5
AA5
A
83 95Right-handed alpha
Helix 6
AA6
A
97 101Right-handed 310
Helix 7
AA7
A
102 120Right-handed alpha
Helix 8
AA8
A
172 178Right-handed alpha
Helix 9
AA9
A
182 185Right-handed 310
Helix 10
AB1
A
186 210Right-handed alpha
Helix 11
AB2
A
211 216Right-handed 310
Helix 12
AB3
A
242 266Right-handed alpha
Helix 13
AB4
A
269 276Right-handed alpha
Helix 14
AB5
A
276 297Right-handed alpha
Helix 15
AB6
A
300 314Right-handed alpha
Helix 16
AB7
A
315 319Right-handed 310
Helix 17
AB8
A
320 325Right-handed alpha
Helix 18
AB9
A
328 341Right-handed alpha
Helix 19
AC1
A
341 367Right-handed alpha
Helix 20
AC2
A
375 382Right-handed 310
Helix 21
AC3
A
386 399Right-handed alpha
Helix 22
AC4
A
410 430Right-handed alpha
Helix 23
AC5
A
431 452Right-handed alpha
Helix 24
AC6
B
23 28Right-handed alpha
Helix 25
AC7
B
32 38Right-handed alpha
Helix 26
AC8
B
41 46Right-handed alpha
Helix 27
AC9
B
60 74Right-handed alpha
Helix 28
AD1
B
83 95Right-handed alpha
Helix 29
AD2
B
97 101Right-handed 310
Helix 30
AD3
B
102 120Right-handed alpha
Helix 31
AD4
B
172 178Right-handed alpha
Helix 32
AD5
B
182 185Right-handed 310
Helix 33
AD6
B
186 210Right-handed alpha
Helix 34
AD7
B
211 216Right-handed 310
Helix 35
AD8
B
242 266Right-handed alpha
Helix 36
AD9
B
269 276Right-handed alpha
Helix 37
AE1
B
276 297Right-handed alpha
Helix 38
AE2
B
300 314Right-handed alpha
Helix 39
AE3
B
315 319Right-handed 310
Helix 40
AE4
B
320 325Right-handed alpha
Helix 41
AE5
B
328 341Right-handed alpha
Helix 42
AE6
B
341 367Right-handed alpha
Helix 43
AE7
B
375 382Right-handed 310
Helix 44
AE8
B
386 399Right-handed alpha
Helix 45
AE9
B
410 430Right-handed alpha
Helix 46
AF1
B
431 452Right-handed alpha
Helix 47
AF2
D
23 28Right-handed alpha
Helix 48
AF3
D
32 38Right-handed alpha
Helix 49
AF4
D
41 46Right-handed alpha
Helix 50
AF5
D
60 74Right-handed alpha
Helix 51
AF6
D
83 95Right-handed alpha
Helix 52
AF7
D
97 101Right-handed 310
Helix 53
AF8
D
102 120Right-handed alpha
Helix 54
AF9
D
172 178Right-handed alpha
Helix 55
AG1
D
182 185Right-handed 310
Helix 56
AG2
D
186 210Right-handed alpha
Helix 57
AG3
D
211 216Right-handed 310
Helix 58
AG4
D
242 266Right-handed alpha
Helix 59
AG5
D
269 276Right-handed alpha
Helix 60
AG6
D
276 297Right-handed alpha
Helix 61
AG7
D
300 314Right-handed alpha
Helix 62
AG8
D
315 319Right-handed 310
Helix 63
AG9
D
320 325Right-handed alpha
Helix 64
AH1
D
328 341Right-handed alpha
Helix 65
AH2
D
341 367Right-handed alpha
Helix 66
AH3
D
375 382Right-handed 310
Helix 67
AH4
D
386 399Right-handed alpha
Helix 68
AH5
D
410 430Right-handed alpha
Helix 69
AH6
D
431 452Right-handed alpha
Helix 70
AH7
C
23 28Right-handed alpha
Helix 71
AH8
C
32 38Right-handed alpha
Helix 72
AH9
C
41 46Right-handed alpha
Helix 73
AI1
C
60 74Right-handed alpha
Helix 74
AI2
C
83 95Right-handed alpha
Helix 75
AI3
C
97 101Right-handed 310
Helix 76
AI4
C
102 120Right-handed alpha
Helix 77
AI5
C
172 178Right-handed alpha
Helix 78
AI6
C
182 185Right-handed 310
Helix 79
AI7
C
186 210Right-handed alpha
Helix 80
AI8
C
211 216Right-handed 310
Helix 81
AI9
C
242 266Right-handed alpha
Helix 82
AJ1
C
269 276Right-handed alpha
Helix 83
AJ2
C
276 297Right-handed alpha
Helix 84
AJ3
C
300 314Right-handed alpha
Helix 85
AJ4
C
315 319Right-handed 310
Helix 86
AJ5
C
320 325Right-handed alpha
Helix 87
AJ6
C
328 341Right-handed alpha
Helix 88
AJ7
C
341 367Right-handed alpha
Helix 89
AJ8
C
375 382Right-handed 310
Helix 90
AJ9
C
386 399Right-handed alpha
Helix 91
AK1
C
410 430Right-handed alpha
Helix 92
AK2
C
431 452Right-handed alpha
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There are 8 sheets in PDB entry 8QUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
9 14anti-parallel
Strand 3
A
54 57parallel
Strand 4
A
48 49anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
238 239anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 22first strand
Strand 2
B
9 14anti-parallel
Strand 3
B
54 57parallel
Strand 4
B
48 49anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
238 239anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 22first strand
Strand 2
D
9 14anti-parallel
Strand 3
D
54 57parallel
Strand 4
D
48 49anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
218 219first strand
Strand 2
D
238 239anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 22first strand
Strand 2
C
9 14anti-parallel
Strand 3
C
54 57parallel
Strand 4
C
48 49anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 219first strand
Strand 2
C
238 239anti-parallel
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