Analysis of interatomic Contacts of Structural Units in PDB entry:
8QUE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QUE entry

There are 8 chains in PDB entry 8QUE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 486
C	SER 2	PRO 698
D	ASN 2	ARG 677
E	PRO 2	LYS 543
F	T 44	G 60
G	C 16	T 42
H	A 3	G 8
B	MET 1	GLN 521

There are118 helices in PDB entry 8QUE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	17	Right-handed alpha
Helix 2	AA2	A	23	27	Right-handed 310
Helix 3	AA3	A	31	42	Right-handed alpha
Helix 4	AA4	A	105	117	Right-handed alpha
Helix 5	AA5	A	122	129	Right-handed alpha
Helix 6	AA6	A	135	139	Right-handed 310
Helix 7	AA7	A	142	155	Right-handed alpha
Helix 8	AA8	A	159	166	Right-handed alpha
Helix 9	AA9	A	166	177	Right-handed alpha
Helix 10	AB1	A	183	194	Right-handed alpha
Helix 11	AB2	A	195	199	Right-handed 310
Helix 12	AB3	A	207	210	Right-handed 310
Helix 13	AB4	A	224	241	Right-handed alpha
Helix 14	AB5	A	247	273	Right-handed alpha
Helix 15	AB6	A	313	321	Right-handed alpha
Helix 16	AB7	A	321	333	Right-handed alpha
Helix 17	AB8	A	336	347	Right-handed alpha
Helix 18	AB9	A	352	366	Right-handed alpha
Helix 19	AC1	A	383	385	Right-handed 310
Helix 20	AC2	A	408	412	Right-handed 310
Helix 21	AC3	A	430	438	Right-handed alpha
Helix 22	AC4	A	439	445	Right-handed 310
Helix 23	AC5	A	456	460	Right-handed 310
Helix 24	AC6	A	462	474	Right-handed alpha
Helix 25	AC7	A	480	486	Right-handed alpha
Helix 26	AC8	C	15	20	Right-handed 310
Helix 27	AC9	C	22	26	Right-handed 310
Helix 28	AD1	C	27	40	Right-handed alpha
Helix 29	AD2	C	55	63	Right-handed alpha
Helix 30	AD3	C	133	138	Right-handed alpha
Helix 31	AD4	C	177	181	Right-handed 310
Helix 32	AD5	C	189	195	Right-handed alpha
Helix 33	AD6	C	249	254	Right-handed alpha
Helix 34	AD7	C	255	261	Right-handed alpha
Helix 35	AD8	C	300	328	Right-handed alpha
Helix 36	AD9	C	334	348	Right-handed alpha
Helix 37	AE1	C	421	428	Right-handed alpha
Helix 38	AE2	C	430	453	Right-handed alpha
Helix 39	AE3	C	462	470	Right-handed alpha
Helix 40	AE4	C	472	491	Right-handed alpha
Helix 41	AE5	C	491	500	Right-handed alpha
Helix 42	AE6	C	503	515	Right-handed alpha
Helix 43	AE7	C	528	538	Right-handed alpha
Helix 44	AE8	C	600	605	Right-handed alpha
Helix 45	AE9	C	618	629	Right-handed alpha
Helix 46	AF1	C	630	643	Right-handed alpha
Helix 47	AF2	C	643	656	Right-handed alpha
Helix 48	AF3	C	677	690	Right-handed alpha
Helix 49	AF4	D	8	13	Right-handed alpha
Helix 50	AF5	D	15	21	Right-handed alpha
Helix 51	AF6	D	41	52	Right-handed alpha
Helix 52	AF7	D	53	57	Right-handed 310
Helix 53	AF8	D	77	81	Right-handed 310
Helix 54	AF9	D	90	109	Right-handed alpha
Helix 55	AG1	D	114	137	Right-handed alpha
Helix 56	AG2	D	145	154	Right-handed alpha
Helix 57	AG3	D	155	162	Right-handed alpha
Helix 58	AG4	D	168	174	Right-handed alpha
Helix 59	AG5	D	175	186	Right-handed alpha
Helix 60	AG6	D	193	201	Right-handed alpha
Helix 61	AG7	D	205	214	Right-handed alpha
Helix 62	AG8	D	242	278	Right-handed alpha
Helix 63	AG9	D	302	307	Right-handed 310
Helix 64	AH1	D	351	355	Right-handed alpha
Helix 65	AH2	D	356	360	Right-handed 310
Helix 66	AH3	D	366	385	Right-handed alpha
Helix 67	AH4	D	385	390	Right-handed alpha
Helix 68	AH5	D	401	406	Right-handed alpha
Helix 69	AH6	D	421	425	Right-handed 310
Helix 70	AH7	D	441	446	Right-handed alpha
Helix 71	AH8	D	453	458	Right-handed alpha
Helix 72	AH9	D	491	502	Right-handed alpha
Helix 73	AI1	D	533	546	Right-handed alpha
Helix 74	AI2	D	569	573	Right-handed 310
Helix 75	AI3	D	575	589	Right-handed alpha
Helix 76	AI4	D	594	605	Right-handed alpha
Helix 77	AI5	D	628	636	Right-handed alpha
Helix 78	AI6	D	637	643	Right-handed alpha
Helix 79	AI7	D	647	652	Right-handed alpha
Helix 80	AI8	D	654	658	Right-handed 310
Helix 81	AI9	D	666	672	Right-handed alpha
Helix 82	AJ1	E	3	13	Right-handed alpha
Helix 83	AJ2	E	18	23	Right-handed alpha
Helix 84	AJ3	E	24	31	Right-handed alpha
Helix 85	AJ4	E	40	54	Right-handed alpha
Helix 86	AJ5	E	55	57	Right-handed 310
Helix 87	AJ6	E	70	79	Right-handed alpha
Helix 88	AJ7	E	185	189	Right-handed 310
Helix 89	AJ8	E	205	214	Right-handed alpha
Helix 90	AJ9	E	215	224	Right-handed alpha
Helix 91	AK1	E	273	289	Right-handed alpha
Helix 92	AK2	E	296	302	Right-handed 310
Helix 93	AK3	E	303	310	Right-handed alpha
Helix 94	AK4	E	328	337	Right-handed alpha
Helix 95	AK5	E	340	351	Right-handed alpha
Helix 96	AK6	E	356	367	Right-handed alpha
Helix 97	AK7	E	369	374	Right-handed alpha
Helix 98	AK8	E	389	394	Right-handed alpha
Helix 99	AK9	E	394	410	Right-handed alpha
Helix 100	AL1	E	417	429	Right-handed alpha
Helix 101	AL2	E	437	442	Right-handed alpha
Helix 102	AL3	E	465	471	Right-handed alpha
Helix 103	AL4	E	489	494	Right-handed alpha
Helix 104	AL5	E	518	522	Right-handed 310
Helix 105	AL6	E	526	541	Right-handed alpha
Helix 106	AL7	B	300	304	Right-handed 310
Helix 107	AL8	B	311	323	Right-handed alpha
Helix 108	AL9	B	325	333	Right-handed alpha
Helix 109	AM1	B	337	352	Right-handed alpha
Helix 110	AM2	B	357	368	Right-handed alpha
Helix 111	AM3	B	374	379	Right-handed 310
Helix 112	AM4	B	381	400	Right-handed alpha
Helix 113	AM5	B	401	407	Right-handed alpha
Helix 114	AM6	B	431	442	Right-handed alpha
Helix 115	AM7	B	450	454	Right-handed 310
Helix 116	AM8	B	461	475	Right-handed alpha
Helix 117	AM9	B	483	490	Right-handed alpha
Helix 118	AN1	B	505	521	Right-handed alpha

There are 30 sheets in PDB entry 8QUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	C	692	696	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	212	216	parallel
Strand 3	A	219	222	anti-parallel
Strand 4	B	282	284	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	81	82	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	78	79	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	203	205	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	297	first strand
Strand 2	A	422	427	anti-parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	387	392	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	519	520	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	151	152	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	117	first strand
Strand 2	C	96	102	anti-parallel
Strand 3	C	74	80	anti-parallel
Strand 4	C	144	145	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	127	131	anti-parallel
Strand 3	C	154	155	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	174	first strand
Strand 2	C	417	419	parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	394	401	parallel
Strand 5	C	386	388	anti-parallel
Strand 6	C	567	574	anti-parallel
Strand 7	C	168	174	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	207	first strand
Strand 2	C	369	378	anti-parallel
Strand 3	C	277	285	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	268	270	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	358	361	anti-parallel
Strand 3	E	87	89	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	552	first strand
Strand 2	C	558	560	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	26	30	parallel
Strand 3	D	36	40	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	348	350	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	298	first strand
Strand 2	D	331	335	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	312	first strand
Strand 2	D	318	320	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	410	first strand
Strand 2	D	417	419	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	480	first strand
Strand 2	D	462	467	anti-parallel
Strand 3	D	429	433	anti-parallel
Strand 4	D	510	514	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	606	607	first strand
Strand 2	D	625	626	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	68	first strand
Strand 2	E	96	104	anti-parallel
Strand 3	E	107	108	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	68	first strand
Strand 2	E	96	104	anti-parallel
Strand 3	E	112	116	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	127	first strand
Strand 2	E	130	134	anti-parallel
Strand 3	E	445	447	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	140	first strand
Strand 2	E	385	388	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	146	first strand
Strand 2	E	149	151	anti-parallel
Strand 3	E	160	170	anti-parallel
Strand 4	E	173	181	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	146	first strand
Strand 2	E	149	151	anti-parallel
Strand 3	E	160	170	anti-parallel
Strand 4	E	248	250	anti-parallel
Strand 5	E	265	266	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	478	480	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	459	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QUE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QUE