Analysis of interatomic Contacts of Structural Units in PDB entry:
8QVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QVC entry

There are 2 chains in PDB entry 8QVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4GLU 327
B
 MET 1ASP 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8QVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 21Right-handed alpha
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
44 49Right-handed alpha
Helix 4
AA4
A
56 71Right-handed alpha
Helix 5
AA5
A
92 110Right-handed alpha
Helix 6
AA6
A
122 136Right-handed alpha
Helix 7
AA7
A
152 166Right-handed alpha
Helix 8
AA8
A
176 180Right-handed 310
Helix 9
AA9
A
184 194Right-handed alpha
Helix 10
AB1
A
197 211Right-handed alpha
Helix 11
AB2
A
213 224Right-handed alpha
Helix 12
AB3
A
227 236Right-handed alpha
Helix 13
AB4
A
237 239Right-handed 310
Helix 14
AB5
A
244 255Right-handed 310
Helix 15
AB6
A
275 286Right-handed alpha
Helix 16
AB7
A
298 303Right-handed alpha
Helix 17
AB8
A
309 326Right-handed alpha
Helix 18
AB9
B
2 6Right-handed 310
Helix 19
AC1
B
49 51Right-handed 310
Helix 20
AC2
B
65 70Right-handed 310
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There are 4 sheets in PDB entry 8QVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
139 144parallel
Strand 3
A
114 117parallel
Strand 4
A
73 78parallel
Strand 5
A
40 43parallel
Strand 6
A
7 11parallel
Strand 7
A
291 296parallel
Strand 8
A
258 262parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
53 57anti-parallel
Strand 5
B
60 63anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
74 75anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
95 104anti-parallel
Strand 4
B
113 122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il