Analysis of interatomic Contacts of Structural Units in PDB entry:
8QVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QVE entry

There is 1 chain in PDB entry 8QVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5GLY 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8QVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
56 67Right-handed alpha
Helix 4
AA4
A
79 93Right-handed alpha
Helix 5
AA5
A
97 101Right-handed 310
Helix 6
AA6
A
124 129Right-handed 310
Helix 7
AA7
A
147 163Right-handed alpha
Helix 8
AA8
A
172 187Right-handed alpha
Helix 9
AA9
A
188 190Right-handed 310
Helix 10
AB1
A
214 220Right-handed alpha
Helix 11
AB2
A
221 224Right-handed 310
Helix 12
AB3
A
277 286Right-handed alpha
Helix 13
AB4
A
311 314Right-handed 310
Helix 14
AB5
A
345 347Right-handed 310
Helix 15
AB6
A
400 421Right-handed alpha
Helix 16
AB7
A
473 477Right-handed 310
Helix 17
AB8
A
485 506Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8QVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
34 37parallel
Strand 3
A
6 12parallel
Strand 4
A
262 272parallel
Strand 5
A
248 256anti-parallel
Strand 6
A
237 245anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
34 37parallel
Strand 3
A
6 12parallel
Strand 4
A
262 272parallel
Strand 5
A
469 471parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
118 119anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
325 328anti-parallel
Strand 3
A
337 343anti-parallel
Strand 4
A
361 368anti-parallel
Strand 5
A
302 309anti-parallel
Strand 6
A
422 424anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
325 328anti-parallel
Strand 3
A
337 343anti-parallel
Strand 4
A
361 368anti-parallel
Strand 5
A
302 309anti-parallel
Strand 6
A
431 432anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
209 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
441 442anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 385first strand
Strand 2
A
391 396anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il