Analysis of interatomic Contacts of Structural Units in PDB entry:
8QVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QVR entry

There are 10 chains in PDB entry 8QVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2TYR 37
B
 ALA 13TYR 37
C
 CYS 2TYR 37
D
 ALA 13TYR 37
E
 CYS 2TYR 37
F
 ALA 13TYR 37
G
 CYS 2TYR 37
H
 ALA 13TYR 37
I
 CYS 2TYR 37
J
 ALA 13TYR 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8QVR

There are 8 sheets in PDB entry 8QVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
C
9 13parallel
Strand 3
E
9 13parallel
Strand 4
G
9 13parallel
Strand 5
I
9 13parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
C
16 18parallel
Strand 3
E
16 18parallel
Strand 4
G
16 18parallel
Strand 5
I
16 18parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
C
21 22parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
C
30 32parallel
Strand 3
E
30 32parallel
Strand 4
G
30 32parallel
Strand 5
I
30 32parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
C
35 36parallel
Strand 3
E
35 36parallel
Strand 4
G
35 36parallel
Strand 5
I
35 36parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 22first strand
Strand 2
D
15 22parallel
Strand 3
F
15 22parallel
Strand 4
H
15 22parallel
Strand 5
J
15 22parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
D
35 36parallel
Strand 3
F
35 36parallel
Strand 4
H
35 36parallel
Strand 5
J
35 36parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 22first strand
Strand 2
G
21 22parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il