Analysis of interatomic Contacts of Structural Units in PDB entry:
8QVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QVT entry

There are 2 chains in PDB entry 8QVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 22ALA 581
B
 ALA 28ALA 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8QVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 44Right-handed alpha
Helix 2
AA2
A
51 58Right-handed alpha
Helix 3
AA3
A
69 73Right-handed 310
Helix 4
AA4
A
82 96Right-handed alpha
Helix 5
AA5
A
126 130Right-handed 310
Helix 6
AA6
A
147 149Right-handed 310
Helix 7
AA7
A
167 177Right-handed alpha
Helix 8
AA8
A
192 198Right-handed alpha
Helix 9
AA9
A
205 210Right-handed alpha
Helix 10
AB1
A
211 215Right-handed 310
Helix 11
AB2
A
236 244Right-handed alpha
Helix 12
AB3
A
276 289Right-handed alpha
Helix 13
AB4
A
338 349Right-handed alpha
Helix 14
AB5
A
368 383Right-handed alpha
Helix 15
AB6
A
397 402Right-handed alpha
Helix 16
AB7
A
403 414Right-handed alpha
Helix 17
AB8
A
432 441Right-handed alpha
Helix 18
AB9
A
467 469Right-handed 310
Helix 19
AC1
A
480 484Right-handed 310
Helix 20
AC2
A
503 523Right-handed alpha
Helix 21
AC3
A
535 543Right-handed alpha
Helix 22
AC4
A
544 548Right-handed 310
Helix 23
AC5
A
550 563Right-handed alpha
Helix 24
AC6
A
569 573Right-handed 310
Helix 25
AC7
B
30 44Right-handed alpha
Helix 26
AC8
B
51 58Right-handed alpha
Helix 27
AC9
B
82 96Right-handed alpha
Helix 28
AD1
B
126 130Right-handed 310
Helix 29
AD2
B
147 149Right-handed 310
Helix 30
AD3
B
167 177Right-handed alpha
Helix 31
AD4
B
192 198Right-handed alpha
Helix 32
AD5
B
205 210Right-handed alpha
Helix 33
AD6
B
211 215Right-handed 310
Helix 34
AD7
B
236 244Right-handed alpha
Helix 35
AD8
B
276 289Right-handed alpha
Helix 36
AD9
B
291 296Right-handed alpha
Helix 37
AE1
B
297 299Right-handed 310
Helix 38
AE2
B
338 349Right-handed alpha
Helix 39
AE3
B
368 383Right-handed alpha
Helix 40
AE4
B
397 402Right-handed alpha
Helix 41
AE5
B
404 414Right-handed alpha
Helix 42
AE6
B
432 440Right-handed alpha
Helix 43
AE7
B
467 469Right-handed 310
Helix 44
AE8
B
503 522Right-handed alpha
Helix 45
AE9
B
535 543Right-handed alpha
Helix 46
AF1
B
544 548Right-handed 310
Helix 47
AF2
B
550 563Right-handed alpha
Helix 48
AF3
B
569 573Right-handed 310
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There are 8 sheets in PDB entry 8QVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
76 79anti-parallel
Strand 3
A
121 124parallel
Strand 4
A
102 105parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
159 163anti-parallel
Strand 3
A
251 259anti-parallel
Strand 4
A
218 223anti-parallel
Strand 5
A
228 231anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
261 262anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 396first strand
Strand 2
A
266 274anti-parallel
Strand 3
A
352 361anti-parallel
Strand 4
A
304 310anti-parallel
Strand 5
A
459 465anti-parallel
Strand 6
A
489 495anti-parallel
Strand 7
A
424 429anti-parallel
Strand 8
A
527 529anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
76 79anti-parallel
Strand 3
B
121 124parallel
Strand 4
B
102 105parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 154first strand
Strand 2
B
159 163anti-parallel
Strand 3
B
251 259anti-parallel
Strand 4
B
218 223anti-parallel
Strand 5
B
228 231anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
261 262anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 396first strand
Strand 2
B
266 274anti-parallel
Strand 3
B
351 361anti-parallel
Strand 4
B
304 311anti-parallel
Strand 5
B
459 465anti-parallel
Strand 6
B
489 495anti-parallel
Strand 7
B
424 429anti-parallel
Strand 8
B
527 529anti-parallel
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