Analysis of interatomic Contacts of Structural Units in PDB entry:
8QVU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QVU entry

There are 8 chains in PDB entry 8QVU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	MET 1	MET 103
G	MET 16	CYS 112
F	PRO 61	GLU 204
D	MET 1	MET 103
C	MET 16	CYS 112
B	PRO 61	ALA 207
E	GLU 3	HIS 166
A	THR 2	LYS 167

There are 34 helices in PDB entry 8QVU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	23	36	Right-handed alpha
Helix 2	AA2	H	38	40	Right-handed 310
Helix 3	AA3	H	56	61	Right-handed alpha
Helix 4	AA4	G	33	37	Right-handed alpha
Helix 5	AA5	G	39	47	Right-handed alpha
Helix 6	AA6	G	66	83	Right-handed alpha
Helix 7	AA7	G	96	111	Right-handed alpha
Helix 8	AA8	F	157	170	Right-handed alpha
Helix 9	AA9	F	171	178	Right-handed 310
Helix 10	AB1	F	181	189	Right-handed alpha
Helix 11	AB2	F	193	204	Right-handed alpha
Helix 12	AB3	D	23	36	Right-handed alpha
Helix 13	AB4	D	38	40	Right-handed 310
Helix 14	AB5	D	57	61	Right-handed 310
Helix 15	AB6	C	33	37	Right-handed alpha
Helix 16	AB7	C	39	46	Right-handed alpha
Helix 17	AB8	C	66	84	Right-handed alpha
Helix 18	AB9	C	96	98	Right-handed 310
Helix 19	AC1	C	99	111	Right-handed alpha
Helix 20	AC2	B	157	170	Right-handed alpha
Helix 21	AC3	B	171	175	Right-handed 310
Helix 22	AC4	B	181	190	Right-handed alpha
Helix 23	AC5	B	193	207	Right-handed alpha
Helix 24	AC6	E	15	25	Right-handed alpha
Helix 25	AC7	E	65	75	Right-handed alpha
Helix 26	AC8	E	92	105	Right-handed alpha
Helix 27	AC9	E	126	138	Right-handed alpha
Helix 28	AD1	E	151	166	Right-handed alpha
Helix 29	AD2	A	15	23	Right-handed alpha
Helix 30	AD3	A	65	75	Right-handed alpha
Helix 31	AD4	A	86	92	Right-handed alpha
Helix 32	AD5	A	92	105	Right-handed alpha
Helix 33	AD6	A	126	138	Right-handed alpha
Helix 34	AD7	A	154	167	Right-handed alpha

There are 11 sheets in PDB entry 8QVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	50	first strand
Strand 2	H	42	46	anti-parallel
Strand 3	H	73	81	anti-parallel
Strand 4	H	84	85	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	50	first strand
Strand 2	H	42	46	anti-parallel
Strand 3	H	73	81	anti-parallel
Strand 4	H	2	9	parallel
Strand 5	H	12	19	anti-parallel
Strand 6	G	28	32	parallel
Strand 7	G	18	22	anti-parallel
Strand 8	G	59	61	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	112	first strand
Strand 2	F	71	78	anti-parallel
Strand 3	F	147	152	parallel
Strand 4	F	129	130	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	97	first strand
Strand 2	F	84	89	anti-parallel
Strand 3	F	116	121	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	42	46	anti-parallel
Strand 3	D	73	79	anti-parallel
Strand 4	D	2	9	parallel
Strand 5	D	12	19	anti-parallel
Strand 6	C	28	32	parallel
Strand 7	C	18	22	anti-parallel
Strand 8	C	59	61	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	112	first strand
Strand 2	B	71	78	anti-parallel
Strand 3	B	147	152	parallel
Strand 4	B	129	130	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	117	121	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	50	56	anti-parallel
Strand 3	E	43	45	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	50	56	anti-parallel
Strand 3	E	4	7	parallel
Strand 4	E	77	83	parallel
Strand 5	E	111	116	parallel
Strand 6	E	141	143	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	10	first strand
Strand 2	A	78	81	parallel
Strand 3	A	111	114	parallel
Strand 4	A	141	142	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	55	56	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QVU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QVU