Analysis of interatomic Contacts of Structural Units in PDB entry:
8QVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QVW entry

There are 2 chains in PDB entry 8QVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 553GLU 608
B
 VAL 9GLY 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8QVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
553 557Right-handed 310
Helix 2
AA2
A
564 568Right-handed 310
Helix 3
AA3
A
592 597Right-handed 310
Helix 4
AA4
A
603 607Right-handed 310
Helix 5
AA5
B
10 25Right-handed alpha
Helix 6
AA6
B
27 41Right-handed alpha
Helix 7
AA7
B
44 58Right-handed alpha
Helix 8
AA8
B
60 76Right-handed alpha
Helix 9
AA9
B
80 91Right-handed alpha
Helix 10
AB1
B
93 103Right-handed alpha
Helix 11
AB2
B
108 122Right-handed alpha
Helix 12
AB3
B
124 139Right-handed alpha
Helix 13
AB4
B
143 162Right-handed alpha
Helix 14
AB5
B
176 190Right-handed alpha
Helix 15
AB6
B
192 211Right-handed alpha
Helix 16
AB7
B
222 239Right-handed alpha
Helix 17
AB8
B
241 256Right-handed alpha
Helix 18
AB9
B
260 275Right-handed alpha
Helix 19
AC1
B
278 290Right-handed alpha
Helix 20
AC2
B
293 298Right-handed alpha
Helix 21
AC3
B
299 317Right-handed alpha
Helix 22
AC4
B
320 333Right-handed alpha
Helix 23
AC5
B
340 351Right-handed alpha
Helix 24
AC6
B
354 368Right-handed alpha
Helix 25
AC7
B
371 383Right-handed alpha
Helix 26
AC8
B
388 398Right-handed alpha
Helix 27
AC9
B
405 419Right-handed alpha
Helix 28
AD1
B
421 440Right-handed alpha
Helix 29
AD2
B
443 460Right-handed alpha
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There are no sheets in PDB entry 8QVW
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il