Analysis of interatomic Contacts of Structural Units in PDB entry:
8QVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QVY entry

There are 6 chains in PDB entry 8QVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 18	GLU 169
B	THR 18	GLU 169
C	THR 18	GLU 169
D	THR 18	GLU 169
E	THR 18	GLU 169
F	THR 18	GLU 169

There are 78 helices in PDB entry 8QVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	21	Right-handed 310
Helix 2	AA2	A	29	35	Right-handed alpha
Helix 3	AA3	A	37	49	Right-handed alpha
Helix 4	AA4	A	61	69	Right-handed alpha
Helix 5	AA5	A	70	73	Right-handed 310
Helix 6	AA6	A	77	86	Right-handed alpha
Helix 7	AA7	A	99	109	Right-handed alpha
Helix 8	AA8	A	112	116	Right-handed 310
Helix 9	AA9	A	120	126	Right-handed alpha
Helix 10	AB1	A	128	132	Right-handed 310
Helix 11	AB2	A	139	151	Right-handed alpha
Helix 12	AB3	A	152	156	Right-handed 310
Helix 13	AB4	A	161	167	Right-handed 310
Helix 14	AB5	B	18	21	Right-handed 310
Helix 15	AB6	B	29	35	Right-handed alpha
Helix 16	AB7	B	37	49	Right-handed alpha
Helix 17	AB8	B	61	69	Right-handed alpha
Helix 18	AB9	B	70	73	Right-handed 310
Helix 19	AC1	B	77	86	Right-handed alpha
Helix 20	AC2	B	99	109	Right-handed alpha
Helix 21	AC3	B	112	116	Right-handed 310
Helix 22	AC4	B	120	126	Right-handed alpha
Helix 23	AC5	B	128	132	Right-handed 310
Helix 24	AC6	B	139	151	Right-handed alpha
Helix 25	AC7	B	152	156	Right-handed 310
Helix 26	AC8	B	161	167	Right-handed 310
Helix 27	AC9	C	18	21	Right-handed 310
Helix 28	AD1	C	29	35	Right-handed alpha
Helix 29	AD2	C	37	49	Right-handed alpha
Helix 30	AD3	C	61	69	Right-handed alpha
Helix 31	AD4	C	70	73	Right-handed 310
Helix 32	AD5	C	77	86	Right-handed alpha
Helix 33	AD6	C	99	109	Right-handed alpha
Helix 34	AD7	C	112	116	Right-handed 310
Helix 35	AD8	C	120	126	Right-handed alpha
Helix 36	AD9	C	128	132	Right-handed 310
Helix 37	AE1	C	139	151	Right-handed alpha
Helix 38	AE2	C	152	156	Right-handed 310
Helix 39	AE3	C	161	167	Right-handed 310
Helix 40	AE4	D	18	21	Right-handed 310
Helix 41	AE5	D	29	35	Right-handed alpha
Helix 42	AE6	D	37	49	Right-handed alpha
Helix 43	AE7	D	61	69	Right-handed alpha
Helix 44	AE8	D	70	73	Right-handed 310
Helix 45	AE9	D	77	86	Right-handed alpha
Helix 46	AF1	D	99	109	Right-handed alpha
Helix 47	AF2	D	112	116	Right-handed 310
Helix 48	AF3	D	120	126	Right-handed alpha
Helix 49	AF4	D	128	132	Right-handed 310
Helix 50	AF5	D	139	151	Right-handed alpha
Helix 51	AF6	D	152	156	Right-handed 310
Helix 52	AF7	D	161	167	Right-handed 310
Helix 53	AF8	E	18	21	Right-handed 310
Helix 54	AF9	E	29	35	Right-handed alpha
Helix 55	AG1	E	37	49	Right-handed alpha
Helix 56	AG2	E	61	69	Right-handed alpha
Helix 57	AG3	E	70	73	Right-handed 310
Helix 58	AG4	E	77	86	Right-handed alpha
Helix 59	AG5	E	99	109	Right-handed alpha
Helix 60	AG6	E	112	116	Right-handed 310
Helix 61	AG7	E	120	126	Right-handed alpha
Helix 62	AG8	E	128	132	Right-handed 310
Helix 63	AG9	E	139	151	Right-handed alpha
Helix 64	AH1	E	152	156	Right-handed 310
Helix 65	AH2	E	161	167	Right-handed 310
Helix 66	AH3	F	18	21	Right-handed 310
Helix 67	AH4	F	29	35	Right-handed alpha
Helix 68	AH5	F	37	49	Right-handed alpha
Helix 69	AH6	F	61	69	Right-handed alpha
Helix 70	AH7	F	70	73	Right-handed 310
Helix 71	AH8	F	77	86	Right-handed alpha
Helix 72	AH9	F	99	109	Right-handed alpha
Helix 73	AI1	F	112	116	Right-handed 310
Helix 74	AI2	F	120	126	Right-handed alpha
Helix 75	AI3	F	128	132	Right-handed 310
Helix 76	AI4	F	139	151	Right-handed alpha
Helix 77	AI5	F	152	156	Right-handed 310
Helix 78	AI6	F	161	167	Right-handed 310

There are 6 sheets in PDB entry 8QVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	59	first strand
Strand 2	A	89	96	anti-parallel
Strand 3	A	23	28	anti-parallel
Strand 4	A	134	136	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	59	first strand
Strand 2	B	89	96	anti-parallel
Strand 3	B	23	28	anti-parallel
Strand 4	B	134	136	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	59	first strand
Strand 2	C	89	96	anti-parallel
Strand 3	C	23	28	anti-parallel
Strand 4	C	134	136	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	59	first strand
Strand 2	D	89	96	anti-parallel
Strand 3	D	23	28	anti-parallel
Strand 4	D	134	136	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	59	first strand
Strand 2	E	89	96	anti-parallel
Strand 3	E	23	28	anti-parallel
Strand 4	E	134	136	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	59	first strand
Strand 2	F	89	96	anti-parallel
Strand 3	F	23	28	anti-parallel
Strand 4	F	134	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QVY