Analysis of interatomic Contacts of Structural Units in PDB entry:
8QW3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QW3 entry

There are 6 chains in PDB entry 8QW3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 19	GLU 169
B	GLY 19	GLU 169
C	GLY 15	GLU 169
D	GLY 19	GLU 169
E	GLY 15	GLU 169
F	THR 18	GLU 169

There are 68 helices in PDB entry 8QW3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	35	Right-handed alpha
Helix 2	AA2	A	37	49	Right-handed alpha
Helix 3	AA3	A	61	69	Right-handed alpha
Helix 4	AA4	A	70	73	Right-handed 310
Helix 5	AA5	A	77	86	Right-handed alpha
Helix 6	AA6	A	99	109	Right-handed alpha
Helix 7	AA7	A	112	116	Right-handed 310
Helix 8	AA8	A	120	126	Right-handed alpha
Helix 9	AA9	A	139	151	Right-handed alpha
Helix 10	AB1	A	152	156	Right-handed 310
Helix 11	AB2	A	163	168	Right-handed alpha
Helix 12	AB3	B	29	35	Right-handed alpha
Helix 13	AB4	B	37	49	Right-handed alpha
Helix 14	AB5	B	61	69	Right-handed alpha
Helix 15	AB6	B	70	73	Right-handed 310
Helix 16	AB7	B	77	86	Right-handed alpha
Helix 17	AB8	B	99	109	Right-handed alpha
Helix 18	AB9	B	112	116	Right-handed 310
Helix 19	AC1	B	120	126	Right-handed alpha
Helix 20	AC2	B	139	151	Right-handed alpha
Helix 21	AC3	B	152	156	Right-handed 310
Helix 22	AC4	B	163	168	Right-handed alpha
Helix 23	AC5	C	29	35	Right-handed alpha
Helix 24	AC6	C	37	49	Right-handed alpha
Helix 25	AC7	C	61	69	Right-handed alpha
Helix 26	AC8	C	70	73	Right-handed 310
Helix 27	AC9	C	77	86	Right-handed alpha
Helix 28	AD1	C	99	109	Right-handed alpha
Helix 29	AD2	C	112	116	Right-handed 310
Helix 30	AD3	C	120	126	Right-handed alpha
Helix 31	AD4	C	139	151	Right-handed alpha
Helix 32	AD5	C	152	156	Right-handed 310
Helix 33	AD6	C	163	168	Right-handed alpha
Helix 34	AD7	D	29	35	Right-handed alpha
Helix 35	AD8	D	37	49	Right-handed alpha
Helix 36	AD9	D	61	69	Right-handed alpha
Helix 37	AE1	D	70	73	Right-handed 310
Helix 38	AE2	D	77	86	Right-handed alpha
Helix 39	AE3	D	99	109	Right-handed alpha
Helix 40	AE4	D	112	116	Right-handed 310
Helix 41	AE5	D	120	126	Right-handed alpha
Helix 42	AE6	D	139	151	Right-handed alpha
Helix 43	AE7	D	152	156	Right-handed 310
Helix 44	AE8	D	163	168	Right-handed alpha
Helix 45	AE9	E	29	35	Right-handed alpha
Helix 46	AF1	E	37	49	Right-handed alpha
Helix 47	AF2	E	61	69	Right-handed alpha
Helix 48	AF3	E	70	73	Right-handed 310
Helix 49	AF4	E	77	86	Right-handed alpha
Helix 50	AF5	E	99	109	Right-handed alpha
Helix 51	AF6	E	112	116	Right-handed 310
Helix 52	AF7	E	120	126	Right-handed alpha
Helix 53	AF8	E	128	132	Right-handed 310
Helix 54	AF9	E	139	151	Right-handed alpha
Helix 55	AG1	E	152	156	Right-handed 310
Helix 56	AG2	E	163	168	Right-handed alpha
Helix 57	AG3	F	18	21	Right-handed 310
Helix 58	AG4	F	29	35	Right-handed alpha
Helix 59	AG5	F	37	49	Right-handed alpha
Helix 60	AG6	F	61	69	Right-handed alpha
Helix 61	AG7	F	70	73	Right-handed 310
Helix 62	AG8	F	77	86	Right-handed alpha
Helix 63	AG9	F	99	109	Right-handed alpha
Helix 64	AH1	F	112	116	Right-handed 310
Helix 65	AH2	F	120	126	Right-handed alpha
Helix 66	AH3	F	139	151	Right-handed alpha
Helix 67	AH4	F	152	156	Right-handed 310
Helix 68	AH5	F	163	168	Right-handed alpha

There are 6 sheets in PDB entry 8QW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	58	first strand
Strand 2	A	90	96	anti-parallel
Strand 3	A	23	28	anti-parallel
Strand 4	A	134	136	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	58	first strand
Strand 2	B	90	96	anti-parallel
Strand 3	B	23	28	anti-parallel
Strand 4	B	134	136	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	58	first strand
Strand 2	C	90	96	anti-parallel
Strand 3	C	23	28	anti-parallel
Strand 4	C	134	136	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	58	first strand
Strand 2	D	90	96	anti-parallel
Strand 3	D	23	28	anti-parallel
Strand 4	D	134	136	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	58	first strand
Strand 2	E	90	96	anti-parallel
Strand 3	E	23	28	anti-parallel
Strand 4	E	134	136	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	58	first strand
Strand 2	F	90	96	anti-parallel
Strand 3	F	23	28	anti-parallel
Strand 4	F	134	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QW3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QW3