Analysis of interatomic Contacts of Structural Units in PDB entry:
8QW7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QW7 entry

There are 8 chains in PDB entry 8QW7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	LYS 203
C	MET 17	CYS 112
B	ARG 60	ALA 207
H	MET 1	LYS 104
G	MET 17	CYS 112
F	ARG 60	ALA 207
A	GLU 3	GLU 168
E	VAL 7	HIS 166

There are 35 helices in PDB entry 8QW7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	23	29	Right-handed alpha
Helix 2	AA2	D	100	203	Right-handed 310
Helix 3	AA3	C	33	38	Right-handed alpha
Helix 4	AA4	C	40	45	Right-handed alpha
Helix 5	AA5	C	66	84	Right-handed alpha
Helix 6	AA6	C	96	98	Right-handed 310
Helix 7	AA7	C	99	111	Right-handed alpha
Helix 8	AA8	B	157	170	Right-handed alpha
Helix 9	AA9	B	171	178	Right-handed 310
Helix 10	AB1	B	181	189	Right-handed alpha
Helix 11	AB2	B	193	204	Right-handed alpha
Helix 12	AB3	B	205	207	Right-handed 310
Helix 13	AB4	H	23	36	Right-handed alpha
Helix 14	AB5	H	38	40	Right-handed 310
Helix 15	AB6	H	56	61	Right-handed alpha
Helix 16	AB7	H	100	104	Right-handed 310
Helix 17	AB8	G	33	37	Right-handed alpha
Helix 18	AB9	G	39	45	Right-handed alpha
Helix 19	AC1	G	66	84	Right-handed alpha
Helix 20	AC2	G	96	111	Right-handed alpha
Helix 21	AC3	F	157	168	Right-handed alpha
Helix 22	AC4	F	171	178	Right-handed 310
Helix 23	AC5	F	181	190	Right-handed alpha
Helix 24	AC6	F	193	203	Right-handed alpha
Helix 25	AC7	A	15	25	Right-handed alpha
Helix 26	AC8	A	65	75	Right-handed alpha
Helix 27	AC9	A	86	105	Right-handed alpha
Helix 28	AD1	A	126	138	Right-handed alpha
Helix 29	AD2	A	151	167	Right-handed alpha
Helix 30	AD3	E	21	26	Right-handed alpha
Helix 31	AD4	E	65	75	Right-handed alpha
Helix 32	AD5	E	86	92	Right-handed alpha
Helix 33	AD6	E	92	104	Right-handed alpha
Helix 34	AD7	E	126	138	Right-handed alpha
Helix 35	AD8	E	157	166	Right-handed alpha

There are 10 sheets in PDB entry 8QW7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	45	first strand
Strand 2	D	73	79	anti-parallel
Strand 3	D	2	8	parallel
Strand 4	D	12	19	anti-parallel
Strand 5	C	28	32	parallel
Strand 6	C	18	22	anti-parallel
Strand 7	C	60	61	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	112	first strand
Strand 2	B	71	78	anti-parallel
Strand 3	B	147	152	parallel
Strand 4	B	129	130	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	116	121	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	50	first strand
Strand 2	H	42	46	anti-parallel
Strand 3	H	73	79	anti-parallel
Strand 4	H	2	9	parallel
Strand 5	H	12	19	anti-parallel
Strand 6	G	28	32	parallel
Strand 7	G	18	22	anti-parallel
Strand 8	G	60	61	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	112	first strand
Strand 2	F	71	78	anti-parallel
Strand 3	F	147	152	parallel
Strand 4	F	129	130	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	87	first strand
Strand 2	F	118	121	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	4	9	parallel
Strand 4	A	77	83	parallel
Strand 5	A	113	116	parallel
Strand 6	A	141	143	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	49	50	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	10	first strand
Strand 2	E	78	83	parallel
Strand 3	E	111	116	parallel
Strand 4	E	141	142	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	43	first strand
Strand 2	E	52	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QW7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QW7