Analysis of interatomic Contacts of Structural Units in PDB entry:
8QWB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QWB entry

There are 4 chains in PDB entry 8QWB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 25SER 374
B
GLU 24ASP 375
C
LYS 25ASP 375
D
GLU 24SER 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are200 helices in PDB entry 8QWB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
34 40Right-handed alpha
Helix 2
AA2
A
43 54Right-handed alpha
Helix 3
AA3
A
58 71Right-handed alpha
Helix 4
AA4
A
76 86Right-handed alpha
Helix 5
AA5
A
91 107Right-handed alpha
Helix 6
AA6
A
123 148Right-handed alpha
Helix 7
AA7
A
160 171Right-handed alpha
Helix 8
AA8
A
175 189Right-handed alpha
Helix 9
AA9
A
195 207Right-handed alpha
Helix 10
AB1
A
210 224Right-handed alpha
Helix 11
AB2
A
224 229Right-handed alpha
Helix 12
AB3
A
230 234Right-handed 310
Helix 13
AB4
A
273 289Right-handed alpha
Helix 14
AB5
A
299 310Right-handed alpha
Helix 15
AB6
A
311 314Right-handed 310
Helix 16
AB7
A
321 332Right-handed alpha
Helix 17
AB8
A
335 337Right-handed 310
Helix 18
AB9
A
338 357Right-handed alpha
Helix 19
AC1
A
358 360Right-handed 310
Helix 20
AC2
B
34 40Right-handed alpha
Helix 21
AC3
B
43 54Right-handed alpha
Helix 22
AC4
B
58 70Right-handed alpha
Helix 23
AC5
B
76 85Right-handed alpha
Helix 24
AC6
B
91 107Right-handed alpha
Helix 25
AC7
B
124 147Right-handed alpha
Helix 26
AC8
B
160 171Right-handed alpha
Helix 27
AC9
B
175 189Right-handed alpha
Helix 28
AD1
B
195 207Right-handed alpha
Helix 29
AD2
B
210 223Right-handed alpha
Helix 30
AD3
B
229 234Right-handed alpha
Helix 31
AD4
B
273 289Right-handed alpha
Helix 32
AD5
B
303 310Right-handed alpha
Helix 33
AD6
B
321 332Right-handed alpha
Helix 34
AD7
B
335 337Right-handed 310
Helix 35
AD8
B
338 362Right-handed alpha
Helix 36
AD9
B
367 372Right-handed alpha
Helix 37
AE1
C
34 40Right-handed alpha
Helix 38
AE2
C
43 54Right-handed alpha
Helix 39
AE3
C
58 73Right-handed alpha
Helix 40
AE4
C
76 86Right-handed alpha
Helix 41
AE5
C
91 104Right-handed alpha
Helix 42
AE6
C
123 148Right-handed alpha
Helix 43
AE7
C
160 171Right-handed alpha
Helix 44
AE8
C
175 189Right-handed alpha
Helix 45
AE9
C
195 206Right-handed alpha
Helix 46
AF1
C
210 224Right-handed alpha
Helix 47
AF2
C
229 235Right-handed alpha
Helix 48
AF3
C
273 289Right-handed alpha
Helix 49
AF4
C
300 308Right-handed alpha
Helix 50
AF5
C
321 333Right-handed alpha
Helix 51
AF6
C
335 337Right-handed 310
Helix 52
AF7
C
338 361Right-handed alpha
Helix 53
AF8
D
34 42Right-handed alpha
Helix 54
AF9
D
43 54Right-handed alpha
Helix 55
AG1
D
58 70Right-handed alpha
Helix 56
AG2
D
76 85Right-handed alpha
Helix 57
AG3
D
91 105Right-handed alpha
Helix 58
AG4
D
123 149Right-handed alpha
Helix 59
AG5
D
160 171Right-handed alpha
Helix 60
AG6
D
175 189Right-handed alpha
Helix 61
AG7
D
195 206Right-handed alpha
Helix 62
AG8
D
210 224Right-handed alpha
Helix 63
AG9
D
228 232Right-handed 310
Helix 64
AH1
D
234 238Right-handed 310
Helix 65
AH2
D
273 289Right-handed alpha
Helix 66
AH3
D
301 309Right-handed alpha
Helix 67
AH4
D
321 333Right-handed alpha
Helix 68
AH5
D
335 337Right-handed 310
Helix 69
AH6
D
338 357Right-handed alpha
Helix 70
AH7
E
35 40Right-handed alpha
Helix 71
AH8
E
43 53Right-handed alpha
Helix 72
AH9
E
58 70Right-handed alpha
Helix 73
AI1
E
76 86Right-handed alpha
Helix 74
AI2
E
91 104Right-handed alpha
Helix 75
AI3
E
123 148Right-handed alpha
Helix 76
AI4
E
160 171Right-handed alpha
Helix 77
AI5
E
175 189Right-handed alpha
Helix 78
AI6
E
196 207Right-handed alpha
Helix 79
AI7
E
210 224Right-handed alpha
Helix 80
AI8
E
238 242Right-handed 310
Helix 81
AI9
E
273 289Right-handed alpha
Helix 82
AJ1
E
304 310Right-handed alpha
Helix 83
AJ2
E
321 333Right-handed alpha
Helix 84
AJ3
E
335 337Right-handed 310
Helix 85
AJ4
E
338 358Right-handed alpha
Helix 86
AJ5
E
359 361Right-handed 310
Helix 87
AJ6
F
34 40Right-handed alpha
Helix 88
AJ7
F
43 54Right-handed alpha
Helix 89
AJ8
F
58 71Right-handed alpha
Helix 90
AJ9
F
76 86Right-handed alpha
Helix 91
AK1
F
91 104Right-handed alpha
Helix 92
AK2
F
105 107Right-handed 310
Helix 93
AK3
F
123 148Right-handed alpha
Helix 94
AK4
F
160 171Right-handed alpha
Helix 95
AK5
F
175 189Right-handed alpha
Helix 96
AK6
F
195 207Right-handed alpha
Helix 97
AK7
F
210 224Right-handed alpha
Helix 98
AK8
F
229 234Right-handed alpha
Helix 99
AK9
F
273 285Right-handed alpha
Helix 100
AL1
F
300 310Right-handed alpha
Helix 101
AL2
F
321 333Right-handed alpha
Helix 102
AL3
F
335 337Right-handed 310
Helix 103
AL4
F
338 358Right-handed alpha
Helix 104
AL5
F
359 361Right-handed 310
Helix 105
AL6
G
34 42Right-handed alpha
Helix 106
AL7
G
43 54Right-handed alpha
Helix 107
AL8
G
58 70Right-handed alpha
Helix 108
AL9
G
76 86Right-handed alpha
Helix 109
AM1
G
91 107Right-handed alpha
Helix 110
AM2
G
126 148Right-handed alpha
Helix 111
AM3
G
160 171Right-handed alpha
Helix 112
AM4
G
175 191Right-handed alpha
Helix 113
AM5
G
195 207Right-handed alpha
Helix 114
AM6
G
210 224Right-handed alpha
Helix 115
AM7
G
229 234Right-handed alpha
Helix 116
AM8
G
273 289Right-handed alpha
Helix 117
AM9
G
301 306Right-handed alpha
Helix 118
AN1
G
308 312Right-handed 310
Helix 119
AN2
G
321 333Right-handed alpha
Helix 120
AN3
G
335 337Right-handed 310
Helix 121
AN4
G
338 361Right-handed alpha
Helix 122
AN5
H
35 39Right-handed alpha
Helix 123
AN6
H
43 53Right-handed alpha
Helix 124
AN7
H
58 72Right-handed alpha
Helix 125
AN8
H
76 86Right-handed alpha
Helix 126
AN9
H
91 105Right-handed alpha
Helix 127
AO1
H
123 148Right-handed alpha
Helix 128
AO2
H
160 171Right-handed alpha
Helix 129
AO3
H
175 189Right-handed alpha
Helix 130
AO4
H
195 207Right-handed alpha
Helix 131
AO5
H
210 224Right-handed alpha
Helix 132
AO6
H
273 288Right-handed alpha
Helix 133
AO7
H
304 309Right-handed alpha
Helix 134
AO8
H
326 332Right-handed alpha
Helix 135
AO9
H
335 337Right-handed 310
Helix 136
AP1
H
338 361Right-handed alpha
Helix 137
AP2
I
34 40Right-handed alpha
Helix 138
AP3
I
43 53Right-handed alpha
Helix 139
AP4
I
58 71Right-handed alpha
Helix 140
AP5
I
76 85Right-handed alpha
Helix 141
AP6
I
91 104Right-handed alpha
Helix 142
AP7
I
126 149Right-handed alpha
Helix 143
AP8
I
160 171Right-handed alpha
Helix 144
AP9
I
175 190Right-handed alpha
Helix 145
AQ1
I
195 207Right-handed alpha
Helix 146
AQ2
I
210 224Right-handed alpha
Helix 147
AQ3
I
230 234Right-handed 310
Helix 148
AQ4
I
273 289Right-handed alpha
Helix 149
AQ5
I
301 309Right-handed alpha
Helix 150
AQ6
I
322 333Right-handed alpha
Helix 151
AQ7
I
335 337Right-handed 310
Helix 152
AQ8
I
338 358Right-handed alpha
Helix 153
AQ9
J
34 40Right-handed alpha
Helix 154
AR1
J
43 54Right-handed alpha
Helix 155
AR2
J
58 72Right-handed alpha
Helix 156
AR3
J
76 85Right-handed alpha
Helix 157
AR4
J
91 104Right-handed alpha
Helix 158
AR5
J
123 149Right-handed alpha
Helix 159
AR6
J
160 171Right-handed alpha
Helix 160
AR7
J
175 189Right-handed alpha
Helix 161
AR8
J
195 207Right-handed alpha
Helix 162
AR9
J
210 224Right-handed alpha
Helix 163
AS1
J
231 235Right-handed 310
Helix 164
AS2
J
273 289Right-handed alpha
Helix 165
AS3
J
299 309Right-handed alpha
Helix 166
AS4
J
310 313Right-handed 310
Helix 167
AS5
J
321 333Right-handed alpha
Helix 168
AS6
J
335 337Right-handed 310
Helix 169
AS7
J
338 359Right-handed alpha
Helix 170
AS8
K
34 40Right-handed alpha
Helix 171
AS9
K
43 54Right-handed alpha
Helix 172
AT1
K
58 70Right-handed alpha
Helix 173
AT2
K
76 86Right-handed alpha
Helix 174
AT3
K
91 104Right-handed alpha
Helix 175
AT4
K
124 126Right-handed 310
Helix 176
AT5
K
127 148Right-handed alpha
Helix 177
AT6
K
160 171Right-handed alpha
Helix 178
AT7
K
175 189Right-handed alpha
Helix 179
AT8
K
195 207Right-handed alpha
Helix 180
AT9
K
210 224Right-handed alpha
Helix 181
AU1
K
273 289Right-handed alpha
Helix 182
AU2
K
300 310Right-handed alpha
Helix 183
AU3
K
321 333Right-handed alpha
Helix 184
AU4
K
335 337Right-handed 310
Helix 185
AU5
K
338 361Right-handed alpha
Helix 186
AU6
L
34 40Right-handed alpha
Helix 187
AU7
L
43 54Right-handed alpha
Helix 188
AU8
L
58 72Right-handed alpha
Helix 189
AU9
L
76 85Right-handed alpha
Helix 190
AV1
L
91 107Right-handed alpha
Helix 191
AV2
L
126 149Right-handed alpha
Helix 192
AV3
L
160 171Right-handed alpha
Helix 193
AV4
L
175 189Right-handed alpha
Helix 194
AV5
L
195 207Right-handed alpha
Helix 195
AV6
L
210 224Right-handed alpha
Helix 196
AV7
L
273 289Right-handed alpha
Helix 197
AV8
L
300 309Right-handed alpha
Helix 198
AV9
L
321 332Right-handed alpha
Helix 199
AW1
L
335 337Right-handed 310
Helix 200
AW2
L
338 359Right-handed alpha
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There are 2 sheets in PDB entry 8QWB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
29 30first strand
Strand 2
E
33 34anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
29 30first strand
Strand 2
H
33 34anti-parallel
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