Analysis of interatomic Contacts of Structural Units in PDB entry:
8QWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QWD entry

There is 1 chain in PDB entry 8QWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ARG 1259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8QWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed alpha
Helix 2
AA2
A
27 35Right-handed alpha
Helix 3
AA3
A
38 68Right-handed alpha
Helix 4
AA4
A
71 76Right-handed alpha
Helix 5
AA5
A
76 86Right-handed alpha
Helix 6
AA6
A
92 112Right-handed alpha
Helix 7
AA7
A
117 121Right-handed 310
Helix 8
AA8
A
122 128Right-handed alpha
Helix 9
AA9
A
149 153Right-handed alpha
Helix 10
AB1
A
160 173Right-handed alpha
Helix 11
AB2
A
180 186Right-handed alpha
Helix 12
AB3
A
188 204Right-handed alpha
Helix 13
AB4
A
205 207Right-handed 310
Helix 14
AB5
A
230 235Right-handed alpha
Helix 15
AB6
A
236 238Right-handed 310
Helix 16
AB7
A
239 245Right-handed alpha
Helix 17
AB8
A
245 258Right-handed alpha
Helix 18
AB9
A
270 277Right-handed alpha
Helix 19
AC1
A
278 282Right-handed 310
Helix 20
AC2
A
315 332Right-handed alpha
Helix 21
AC3
A
340 351Right-handed alpha
Helix 22
AC4
A
366 376Right-handed alpha
Helix 23
AC5
A
380 389Right-handed alpha
Helix 24
AC6
A
422 430Right-handed alpha
Helix 25
AC7
A
445 457Right-handed alpha
Helix 26
AC8
A
491 510Right-handed alpha
Helix 27
AC9
A
511 513Right-handed 310
Helix 28
AD1
A
527 543Right-handed alpha
Helix 29
AD2
A
543 555Right-handed alpha
Helix 30
AD3
A
604 607Right-handed 310
Helix 31
AD4
A
633 644Right-handed alpha
Helix 32
AD5
A
647 652Right-handed alpha
Helix 33
AD6
A
654 659Right-handed alpha
Helix 34
AD7
A
677 692Right-handed alpha
Helix 35
AD8
A
693 697Right-handed 310
Helix 36
AD9
A
710 723Right-handed alpha
Helix 37
AE1
A
732 742Right-handed alpha
Helix 38
AE2
A
763 773Right-handed alpha
Helix 39
AE3
A
774 779Right-handed alpha
Helix 40
AE4
A
857 868Right-handed alpha
Helix 41
AE5
A
869 872Right-handed 310
Helix 42
AE6
A
941 961Right-handed alpha
Helix 43
AE7
A
969 972Right-handed 310
Helix 44
AE8
A
981 998Right-handed alpha
Helix 45
AE9
A
1042 1046Right-handed 310
Helix 46
AF1
A
1062 1072Right-handed alpha
Helix 47
AF2
A
1090 1094Right-handed 310
Helix 48
AF3
A
1130 1142Right-handed alpha
Helix 49
AF4
A
1152 1157Right-handed alpha
Helix 50
AF5
A
1161 1176Right-handed alpha
Helix 51
AF6
A
1216 1236Right-handed alpha
Helix 52
AF7
A
1248 1257Right-handed alpha
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There are 7 sheets in PDB entry 8QWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 731first strand
Strand 2
A
622 629anti-parallel
Strand 3
A
586 592anti-parallel
Strand 4
A
563 569parallel
Strand 5
A
788 793anti-parallel
Strand 6
A
839 847anti-parallel
Strand 7
A
783 785anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 731first strand
Strand 2
A
622 629anti-parallel
Strand 3
A
586 592anti-parallel
Strand 4
A
597 602anti-parallel
Strand 5
A
744 750anti-parallel
Strand 6
A
14 24anti-parallel
Strand 7
A
839 847anti-parallel
Strand 8
A
783 785anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
419 421anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
896 900first strand
Strand 2
A
885 890anti-parallel
Strand 3
A
873 879anti-parallel
Strand 4
A
962 968parallel
Strand 5
A
1035 1039parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1075 1079first strand
Strand 2
A
1084 1088anti-parallel
Strand 3
A
1104 1106anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1111 1114first strand
Strand 2
A
1126 1129anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1179 1181first strand
Strand 2
A
1188 1190anti-parallel
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