Analysis of interatomic Contacts of Structural Units in PDB entry:
8QWE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QWE entry

There are 4 chains in PDB entry 8QWE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ASN 1261
C
 G -19 C 14
T
 G -17 G 11
N
 C -11 A 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8QWE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 36Right-handed alpha
Helix 2
AA2
A
36 67Right-handed alpha
Helix 3
AA3
A
74 85Right-handed alpha
Helix 4
AA4
A
92 117Right-handed alpha
Helix 5
AA5
A
118 123Right-handed 310
Helix 6
AA6
A
125 140Right-handed alpha
Helix 7
AA7
A
144 154Right-handed alpha
Helix 8
AA8
A
158 160Right-handed 310
Helix 9
AA9
A
161 170Right-handed alpha
Helix 10
AB1
A
180 188Right-handed alpha
Helix 11
AB2
A
188 207Right-handed alpha
Helix 12
AB3
A
239 244Right-handed alpha
Helix 13
AB4
A
245 257Right-handed alpha
Helix 14
AB5
A
270 283Right-handed alpha
Helix 15
AB6
A
284 289Right-handed alpha
Helix 16
AB7
A
315 331Right-handed alpha
Helix 17
AB8
A
340 351Right-handed alpha
Helix 18
AB9
A
365 377Right-handed alpha
Helix 19
AC1
A
380 389Right-handed alpha
Helix 20
AC2
A
422 431Right-handed alpha
Helix 21
AC3
A
445 457Right-handed alpha
Helix 22
AC4
A
491 510Right-handed alpha
Helix 23
AC5
A
527 542Right-handed alpha
Helix 24
AC6
A
543 555Right-handed alpha
Helix 25
AC7
A
582 587Right-handed alpha
Helix 26
AC8
A
604 607Right-handed 310
Helix 27
AC9
A
633 643Right-handed alpha
Helix 28
AD1
A
647 652Right-handed alpha
Helix 29
AD2
A
654 664Right-handed alpha
Helix 30
AD3
A
674 692Right-handed alpha
Helix 31
AD4
A
695 699Right-handed 310
Helix 32
AD5
A
704 708Right-handed 310
Helix 33
AD6
A
710 722Right-handed alpha
Helix 34
AD7
A
732 741Right-handed alpha
Helix 35
AD8
A
751 755Right-handed 310
Helix 36
AD9
A
763 773Right-handed alpha
Helix 37
AE1
A
774 780Right-handed alpha
Helix 38
AE2
A
831 835Right-handed 310
Helix 39
AE3
A
857 866Right-handed alpha
Helix 40
AE4
A
913 931Right-handed alpha
Helix 41
AE5
A
938 961Right-handed alpha
Helix 42
AE6
A
981 998Right-handed alpha
Helix 43
AE7
A
1062 1072Right-handed alpha
Helix 44
AE8
A
1130 1140Right-handed alpha
Helix 45
AE9
A
1141 1143Right-handed 310
Helix 46
AF1
A
1152 1156Right-handed 310
Helix 47
AF2
A
1161 1173Right-handed alpha
Helix 48
AF3
A
1216 1237Right-handed alpha
Helix 49
AF4
A
1248 1257Right-handed alpha
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There are 10 sheets in PDB entry 8QWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 593first strand
Strand 2
A
596 602anti-parallel
Strand 3
A
744 750anti-parallel
Strand 4
A
14 24anti-parallel
Strand 5
A
841 847anti-parallel
Strand 6
A
784 785anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
419 421anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 566first strand
Strand 2
A
792 794anti-parallel
Strand 3
A
838 839anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 630first strand
Strand 2
A
723 731anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
803 804first strand
Strand 2
A
828 829anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 811first strand
Strand 2
A
821 822anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
896 901first strand
Strand 2
A
886 890anti-parallel
Strand 3
A
873 878anti-parallel
Strand 4
A
962 967parallel
Strand 5
A
1035 1038parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1075 1078first strand
Strand 2
A
1085 1090anti-parallel
Strand 3
A
1102 1103anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1112 1113first strand
Strand 2
A
1127 1128anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1180 1181first strand
Strand 2
A
1188 1189anti-parallel
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