Analysis of interatomic Contacts of Structural Units in PDB entry:
8QWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QWF entry

There are 4 chains in PDB entry 8QWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ASN 1261
C
 G -19 A 13
T
 G -16 G 11
N
 C -11 T 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8QWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
27 36Right-handed alpha
Helix 3
AA3
A
38 67Right-handed alpha
Helix 4
AA4
A
74 85Right-handed alpha
Helix 5
AA5
A
92 117Right-handed alpha
Helix 6
AA6
A
118 121Right-handed 310
Helix 7
AA7
A
125 131Right-handed alpha
Helix 8
AA8
A
131 140Right-handed alpha
Helix 9
AA9
A
144 153Right-handed alpha
Helix 10
AB1
A
157 160Right-handed 310
Helix 11
AB2
A
161 170Right-handed alpha
Helix 12
AB3
A
180 188Right-handed alpha
Helix 13
AB4
A
188 207Right-handed alpha
Helix 14
AB5
A
231 235Right-handed 310
Helix 15
AB6
A
241 244Right-handed 310
Helix 16
AB7
A
245 257Right-handed alpha
Helix 17
AB8
A
270 279Right-handed alpha
Helix 18
AB9
A
315 331Right-handed alpha
Helix 19
AC1
A
340 351Right-handed alpha
Helix 20
AC2
A
365 376Right-handed alpha
Helix 21
AC3
A
380 389Right-handed alpha
Helix 22
AC4
A
422 430Right-handed alpha
Helix 23
AC5
A
445 456Right-handed alpha
Helix 24
AC6
A
491 510Right-handed alpha
Helix 25
AC7
A
511 513Right-handed 310
Helix 26
AC8
A
527 542Right-handed alpha
Helix 27
AC9
A
543 556Right-handed alpha
Helix 28
AD1
A
580 584Right-handed 310
Helix 29
AD2
A
633 643Right-handed alpha
Helix 30
AD3
A
647 652Right-handed alpha
Helix 31
AD4
A
654 664Right-handed alpha
Helix 32
AD5
A
674 692Right-handed alpha
Helix 33
AD6
A
695 699Right-handed 310
Helix 34
AD7
A
704 708Right-handed 310
Helix 35
AD8
A
710 722Right-handed alpha
Helix 36
AD9
A
732 741Right-handed alpha
Helix 37
AE1
A
751 755Right-handed 310
Helix 38
AE2
A
763 773Right-handed alpha
Helix 39
AE3
A
774 780Right-handed alpha
Helix 40
AE4
A
831 835Right-handed 310
Helix 41
AE5
A
857 868Right-handed alpha
Helix 42
AE6
A
914 931Right-handed alpha
Helix 43
AE7
A
938 961Right-handed alpha
Helix 44
AE8
A
981 998Right-handed alpha
Helix 45
AE9
A
1062 1072Right-handed alpha
Helix 46
AF1
A
1092 1094Right-handed 310
Helix 47
AF2
A
1130 1141Right-handed alpha
Helix 48
AF3
A
1161 1175Right-handed alpha
Helix 49
AF4
A
1216 1237Right-handed alpha
Helix 50
AF5
A
1248 1257Right-handed alpha
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There are 10 sheets in PDB entry 8QWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 567first strand
Strand 2
A
790 794anti-parallel
Strand 3
A
838 847anti-parallel
Strand 4
A
14 22anti-parallel
Strand 5
A
744 750anti-parallel
Strand 6
A
596 602anti-parallel
Strand 7
A
589 593anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 567first strand
Strand 2
A
790 794anti-parallel
Strand 3
A
838 847anti-parallel
Strand 4
A
783 785anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
419 421anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 630first strand
Strand 2
A
723 731anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
803 804first strand
Strand 2
A
828 829anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 811first strand
Strand 2
A
821 822anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
896 901first strand
Strand 2
A
886 890anti-parallel
Strand 3
A
873 878anti-parallel
Strand 4
A
962 967parallel
Strand 5
A
1035 1038parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 905first strand
Strand 2
A
912 913anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1075 1079first strand
Strand 2
A
1084 1090anti-parallel
Strand 3
A
1102 1106anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1179 1181first strand
Strand 2
A
1188 1195anti-parallel
Strand 3
A
1201 1203anti-parallel
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