Analysis of interatomic Contacts of Structural Units in PDB entry:
8QWT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QWT entry

There is 1 chain in PDB entry 8QWT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1SER 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8QWT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
16 28Right-handed alpha
Helix 3
AA3
A
35 50Right-handed alpha
Helix 4
AA4
A
64 69Right-handed alpha
Helix 5
AA5
A
69 74Right-handed alpha
Helix 6
AA6
A
75 80Right-handed 310
Helix 7
AA7
A
81 94Right-handed alpha
Helix 8
AA8
A
99 114Right-handed alpha
Helix 9
AA9
A
145 157Right-handed alpha
Helix 10
AB1
A
159 168Right-handed alpha
Helix 11
AB2
A
169 172Right-handed 310
Helix 12
AB3
A
196 204Right-handed alpha
Helix 13
AB4
A
230 238Right-handed alpha
Helix 14
AB5
A
241 249Right-handed alpha
Helix 15
AB6
A
251 267Right-handed alpha
Helix 16
AB7
A
272 276Right-handed 310
Helix 17
AB8
A
280 283Right-handed 310
Helix 18
AB9
A
300 304Right-handed 310
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There are 3 sheets in PDB entry 8QWT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
277 278anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
185 186anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
228 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il