Analysis of interatomic Contacts of Structural Units in PDB entry:
8QWX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QWX entry

There is 1 chain in PDB entry 8QWX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1PRO 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8QWX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed 310
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
34 49Right-handed alpha
Helix 4
AA4
A
62 67Right-handed alpha
Helix 5
AA5
A
67 72Right-handed alpha
Helix 6
AA6
A
73 78Right-handed 310
Helix 7
AA7
A
79 94Right-handed alpha
Helix 8
AA8
A
99 113Right-handed alpha
Helix 9
AA9
A
145 156Right-handed alpha
Helix 10
AB1
A
159 172Right-handed alpha
Helix 11
AB2
A
197 205Right-handed alpha
Helix 12
AB3
A
231 237Right-handed alpha
Helix 13
AB4
A
242 249Right-handed alpha
Helix 14
AB5
A
252 269Right-handed alpha
Helix 15
AB6
A
273 277Right-handed 310
Helix 16
AB7
A
281 284Right-handed 310
Helix 17
AB8
A
302 306Right-handed 310
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There are 3 sheets in PDB entry 8QWX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
278 279anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
186 187anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
229 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il