Analysis of interatomic Contacts of Structural Units in PDB entry:
8QWZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QWZ entry

There are 2 chains in PDB entry 8QWZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 3ALA 332
B
SER 2ALA 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8QWZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
26 29Right-handed 310
Helix 3
AA3
A
35 37Right-handed 310
Helix 4
AA4
A
74 89Right-handed alpha
Helix 5
AA5
A
129 150Right-handed alpha
Helix 6
AA6
A
158 160Right-handed 310
Helix 7
AA7
A
166 169Right-handed 310
Helix 8
AA8
A
194 198Right-handed 310
Helix 9
AA9
A
199 204Right-handed alpha
Helix 10
AB1
A
211 228Right-handed alpha
Helix 11
AB2
A
237 250Right-handed alpha
Helix 12
AB3
A
250 262Right-handed alpha
Helix 13
AB4
A
267 273Right-handed alpha
Helix 14
AB5
A
280 285Right-handed 310
Helix 15
AB6
A
289 293Right-handed 310
Helix 16
AB7
A
294 305Right-handed alpha
Helix 17
AB8
A
308 312Right-handed 310
Helix 18
AB9
A
314 320Right-handed alpha
Helix 19
AC1
A
321 323Right-handed 310
Helix 20
AC2
A
324 331Right-handed alpha
Helix 21
AC3
B
20 25Right-handed alpha
Helix 22
AC4
B
26 29Right-handed 310
Helix 23
AC5
B
35 37Right-handed 310
Helix 24
AC6
B
74 89Right-handed alpha
Helix 25
AC7
B
120 125Right-handed alpha
Helix 26
AC8
B
129 150Right-handed alpha
Helix 27
AC9
B
158 160Right-handed 310
Helix 28
AD1
B
166 169Right-handed 310
Helix 29
AD2
B
194 198Right-handed 310
Helix 30
AD3
B
199 204Right-handed alpha
Helix 31
AD4
B
211 228Right-handed alpha
Helix 32
AD5
B
237 250Right-handed alpha
Helix 33
AD6
B
250 262Right-handed alpha
Helix 34
AD7
B
267 273Right-handed alpha
Helix 35
AD8
B
280 285Right-handed 310
Helix 36
AD9
B
289 293Right-handed 310
Helix 37
AE1
B
294 305Right-handed alpha
Helix 38
AE2
B
308 312Right-handed 310
Helix 39
AE3
B
314 320Right-handed alpha
Helix 40
AE4
B
321 323Right-handed 310
Helix 41
AE5
B
324 332Right-handed alpha
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There are 6 sheets in PDB entry 8QWZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 47first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
63 70anti-parallel
Strand 4
A
109 114anti-parallel
Strand 5
A
97 102anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 153first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 165first strand
Strand 2
A
170 173anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
39 47first strand
Strand 2
B
51 58anti-parallel
Strand 3
B
64 70anti-parallel
Strand 4
B
109 114anti-parallel
Strand 5
B
97 102anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
152 153first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
162 165first strand
Strand 2
B
170 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il