Analysis of interatomic Contacts of Structural Units in PDB entry:
8QX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QX9 entry

There are 12 chains in PDB entry 8QX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 304GLY 348
B
 GLY 304GLY 348
C
 GLY 304GLY 348
D
 GLY 304GLY 348
E
 GLY 304GLY 348
F
 GLY 304GLY 348
G
 GLY 304GLY 348
H
 GLY 304GLY 348
I
 GLY 304GLY 348
J
 GLY 304GLY 348
K
 GLY 304GLY 348
L
 GLY 304GLY 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8QX9

There are 6 sheets in PDB entry 8QX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
C
311 312parallel
Strand 3
E
311 312parallel
Strand 4
G
311 312parallel
Strand 5
I
311 312parallel
Strand 6
K
311 312parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
C
321 323parallel
Strand 3
E
321 323parallel
Strand 4
G
321 323parallel
Strand 5
I
321 323parallel
Strand 6
K
321 323parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 334first strand
Strand 2
C
328 334parallel
Strand 3
E
328 334parallel
Strand 4
G
328 334parallel
Strand 5
I
328 334parallel
Strand 6
K
328 334parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 312first strand
Strand 2
D
311 312parallel
Strand 3
F
311 312parallel
Strand 4
H
311 312parallel
Strand 5
J
311 312parallel
Strand 6
L
311 312parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 323first strand
Strand 2
D
321 323parallel
Strand 3
F
321 323parallel
Strand 4
H
321 323parallel
Strand 5
J
321 323parallel
Strand 6
L
321 323parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 334first strand
Strand 2
D
328 334parallel
Strand 3
F
328 334parallel
Strand 4
H
328 334parallel
Strand 5
J
328 334parallel
Strand 6
L
328 334parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il