Analysis of interatomic Contacts of Structural Units in PDB entry:
8QXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QXA entry

There are 12 chains in PDB entry 8QXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 304GLY 348
B
 GLY 304GLY 348
C
 GLY 304GLY 348
D
 GLY 304GLY 348
E
 GLY 304GLY 348
F
 GLY 304GLY 348
G
 GLY 304GLY 348
H
 GLY 304GLY 348
I
 GLY 304GLY 348
J
 GLY 304GLY 348
K
 GLY 304GLY 348
L
 GLY 304GLY 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8QXA

There are 6 sheets in PDB entry 8QXA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
C
317 318parallel
Strand 3
E
317 318parallel
Strand 4
G
317 318parallel
Strand 5
I
317 318parallel
Strand 6
K
317 318parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
C
323 324parallel
Strand 3
E
323 324parallel
Strand 4
G
323 324parallel
Strand 5
I
323 324parallel
Strand 6
K
323 324parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
C
329 331parallel
Strand 3
E
329 331parallel
Strand 4
G
329 331parallel
Strand 5
I
329 331parallel
Strand 6
K
329 331parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
C
339 340parallel
Strand 3
E
339 340parallel
Strand 4
G
339 340parallel
Strand 5
I
339 340parallel
Strand 6
K
339 340parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 332first strand
Strand 2
D
326 332parallel
Strand 3
F
326 332parallel
Strand 4
H
326 332parallel
Strand 5
J
326 332parallel
Strand 6
L
326 332parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 338first strand
Strand 2
D
337 338parallel
Strand 3
F
337 338parallel
Strand 4
H
337 338parallel
Strand 5
J
337 338parallel
Strand 6
L
337 338parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il