Analysis of interatomic Contacts of Structural Units in PDB entry:
8QXL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QXL entry

There are 4 chains in PDB entry 8QXL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 114	PHE 578
B	THR 114	PHE 578
C	THR 114	PHE 578
D	THR 114	PHE 578

There are107 helices in PDB entry 8QXL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	137	Right-handed alpha
Helix 2	AA2	A	138	143	Right-handed alpha
Helix 3	AA3	A	144	147	Right-handed 310
Helix 4	AA4	A	151	156	Right-handed 310
Helix 5	AA5	A	163	186	Right-handed alpha
Helix 6	AA6	A	187	190	Right-handed 310
Helix 7	AA7	A	192	205	Right-handed alpha
Helix 8	AA8	A	214	226	Right-handed alpha
Helix 9	AA9	A	232	247	Right-handed alpha
Helix 10	AB1	A	250	257	Right-handed alpha
Helix 11	AB2	A	260	273	Right-handed alpha
Helix 12	AB3	A	291	295	Right-handed 310
Helix 13	AB4	A	309	324	Right-handed alpha
Helix 14	AB5	A	330	338	Right-handed alpha
Helix 15	AB6	A	352	354	Right-handed 310
Helix 16	AB7	A	355	373	Right-handed alpha
Helix 17	AB8	A	376	394	Right-handed alpha
Helix 18	AB9	A	410	414	Right-handed 310
Helix 19	AC1	A	415	421	Right-handed alpha
Helix 20	AC2	A	424	432	Right-handed alpha
Helix 21	AC3	A	435	437	Right-handed 310
Helix 22	AC4	A	438	450	Right-handed alpha
Helix 23	AC5	A	477	481	Right-handed 310
Helix 24	AC6	A	513	518	Right-handed 310
Helix 25	AC7	A	558	574	Right-handed alpha
Helix 26	AC8	B	129	137	Right-handed alpha
Helix 27	AC9	B	138	143	Right-handed alpha
Helix 28	AD1	B	144	147	Right-handed 310
Helix 29	AD2	B	151	156	Right-handed 310
Helix 30	AD3	B	163	186	Right-handed alpha
Helix 31	AD4	B	187	190	Right-handed 310
Helix 32	AD5	B	192	205	Right-handed alpha
Helix 33	AD6	B	214	220	Right-handed alpha
Helix 34	AD7	B	220	226	Right-handed alpha
Helix 35	AD8	B	232	249	Right-handed alpha
Helix 36	AD9	B	250	258	Right-handed alpha
Helix 37	AE1	B	260	274	Right-handed alpha
Helix 38	AE2	B	291	299	Right-handed 310
Helix 39	AE3	B	309	324	Right-handed alpha
Helix 40	AE4	B	330	337	Right-handed alpha
Helix 41	AE5	B	355	373	Right-handed alpha
Helix 42	AE6	B	376	393	Right-handed alpha
Helix 43	AE7	B	402	404	Right-handed 310
Helix 44	AE8	B	410	414	Right-handed 310
Helix 45	AE9	B	415	420	Right-handed alpha
Helix 46	AF1	B	424	432	Right-handed alpha
Helix 47	AF2	B	435	437	Right-handed 310
Helix 48	AF3	B	438	450	Right-handed alpha
Helix 49	AF4	B	469	473	Right-handed 310
Helix 50	AF5	B	475	483	Right-handed alpha
Helix 51	AF6	B	494	496	Right-handed 310
Helix 52	AF7	B	513	518	Right-handed 310
Helix 53	AF8	B	533	537	Right-handed 310
Helix 54	AF9	B	558	576	Right-handed alpha
Helix 55	AG1	C	129	137	Right-handed alpha
Helix 56	AG2	C	138	143	Right-handed alpha
Helix 57	AG3	C	144	147	Right-handed 310
Helix 58	AG4	C	150	156	Right-handed 310
Helix 59	AG5	C	163	186	Right-handed alpha
Helix 60	AG6	C	192	205	Right-handed alpha
Helix 61	AG7	C	214	226	Right-handed alpha
Helix 62	AG8	C	232	249	Right-handed alpha
Helix 63	AG9	C	250	256	Right-handed alpha
Helix 64	AH1	C	260	273	Right-handed alpha
Helix 65	AH2	C	291	298	Right-handed 310
Helix 66	AH3	C	309	324	Right-handed alpha
Helix 67	AH4	C	330	337	Right-handed alpha
Helix 68	AH5	C	355	373	Right-handed alpha
Helix 69	AH6	C	376	393	Right-handed alpha
Helix 70	AH7	C	402	404	Right-handed 310
Helix 71	AH8	C	410	414	Right-handed 310
Helix 72	AH9	C	415	421	Right-handed alpha
Helix 73	AI1	C	424	432	Right-handed alpha
Helix 74	AI2	C	438	450	Right-handed alpha
Helix 75	AI3	C	469	473	Right-handed 310
Helix 76	AI4	C	475	483	Right-handed alpha
Helix 77	AI5	C	494	496	Right-handed 310
Helix 78	AI6	C	560	576	Right-handed alpha
Helix 79	AI7	D	129	137	Right-handed alpha
Helix 80	AI8	D	138	143	Right-handed alpha
Helix 81	AI9	D	144	147	Right-handed 310
Helix 82	AJ1	D	150	156	Right-handed 310
Helix 83	AJ2	D	163	186	Right-handed alpha
Helix 84	AJ3	D	187	190	Right-handed 310
Helix 85	AJ4	D	192	205	Right-handed alpha
Helix 86	AJ5	D	214	226	Right-handed alpha
Helix 87	AJ6	D	232	249	Right-handed alpha
Helix 88	AJ7	D	250	258	Right-handed alpha
Helix 89	AJ8	D	260	273	Right-handed alpha
Helix 90	AJ9	D	291	299	Right-handed 310
Helix 91	AK1	D	309	324	Right-handed alpha
Helix 92	AK2	D	330	337	Right-handed alpha
Helix 93	AK3	D	355	373	Right-handed alpha
Helix 94	AK4	D	376	394	Right-handed alpha
Helix 95	AK5	D	402	404	Right-handed 310
Helix 96	AK6	D	411	414	Right-handed 310
Helix 97	AK7	D	415	420	Right-handed alpha
Helix 98	AK8	D	421	423	Right-handed 310
Helix 99	AK9	D	424	432	Right-handed alpha
Helix 100	AL1	D	435	437	Right-handed 310
Helix 101	AL2	D	438	450	Right-handed alpha
Helix 102	AL3	D	469	474	Right-handed 310
Helix 103	AL4	D	475	482	Right-handed alpha
Helix 104	AL5	D	494	496	Right-handed 310
Helix 105	AL6	D	513	518	Right-handed 310
Helix 106	AL7	D	533	537	Right-handed 310
Helix 107	AL8	D	558	576	Right-handed alpha

There are 17 sheets in PDB entry 8QXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	126	128	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	343	first strand
Strand 2	A	346	350	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	406	407	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	546	554	anti-parallel
Strand 3	A	499	506	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	521	first strand
Strand 2	A	529	530	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	125	128	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	342	first strand
Strand 2	B	347	352	anti-parallel
Strand 3	B	520	521	parallel
Strand 4	B	529	530	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	406	407	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	459	first strand
Strand 2	B	546	554	anti-parallel
Strand 3	B	498	506	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	125	128	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	343	first strand
Strand 2	C	346	352	anti-parallel
Strand 3	C	520	521	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	406	407	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	546	554	anti-parallel
Strand 3	C	498	506	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	119	first strand
Strand 2	D	125	128	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	343	first strand
Strand 2	D	346	352	anti-parallel
Strand 3	D	520	521	parallel
Strand 4	D	529	530	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	400	first strand
Strand 2	D	406	407	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	458	first strand
Strand 2	D	546	554	anti-parallel
Strand 3	D	498	506	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QXL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QXL