Analysis of interatomic Contacts of Structural Units in PDB entry:
8QXO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QXO entry

There are 4 chains in PDB entry 8QXO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 114	ASN 577
B	THR 114	ASN 577
C	THR 114	ASN 577
D	THR 114	ASN 577

There are105 helices in PDB entry 8QXO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	137	Right-handed alpha
Helix 2	AA2	A	138	143	Right-handed alpha
Helix 3	AA3	A	144	147	Right-handed 310
Helix 4	AA4	A	150	156	Right-handed 310
Helix 5	AA5	A	163	186	Right-handed alpha
Helix 6	AA6	A	187	190	Right-handed 310
Helix 7	AA7	A	192	205	Right-handed alpha
Helix 8	AA8	A	215	226	Right-handed alpha
Helix 9	AA9	A	232	247	Right-handed alpha
Helix 10	AB1	A	249	257	Right-handed alpha
Helix 11	AB2	A	260	273	Right-handed alpha
Helix 12	AB3	A	291	295	Right-handed 310
Helix 13	AB4	A	309	324	Right-handed alpha
Helix 14	AB5	A	330	337	Right-handed alpha
Helix 15	AB6	A	355	373	Right-handed alpha
Helix 16	AB7	A	376	394	Right-handed alpha
Helix 17	AB8	A	402	404	Right-handed 310
Helix 18	AB9	A	415	420	Right-handed alpha
Helix 19	AC1	A	421	423	Right-handed 310
Helix 20	AC2	A	424	433	Right-handed alpha
Helix 21	AC3	A	435	437	Right-handed 310
Helix 22	AC4	A	438	450	Right-handed alpha
Helix 23	AC5	A	469	473	Right-handed 310
Helix 24	AC6	A	474	482	Right-handed alpha
Helix 25	AC7	A	494	496	Right-handed 310
Helix 26	AC8	A	558	577	Right-handed alpha
Helix 27	AC9	B	129	137	Right-handed alpha
Helix 28	AD1	B	138	143	Right-handed alpha
Helix 29	AD2	B	144	147	Right-handed 310
Helix 30	AD3	B	150	156	Right-handed 310
Helix 31	AD4	B	163	186	Right-handed alpha
Helix 32	AD5	B	192	205	Right-handed alpha
Helix 33	AD6	B	214	220	Right-handed alpha
Helix 34	AD7	B	220	226	Right-handed alpha
Helix 35	AD8	B	232	249	Right-handed alpha
Helix 36	AD9	B	250	257	Right-handed alpha
Helix 37	AE1	B	260	271	Right-handed alpha
Helix 38	AE2	B	291	300	Right-handed 310
Helix 39	AE3	B	309	324	Right-handed alpha
Helix 40	AE4	B	330	337	Right-handed alpha
Helix 41	AE5	B	355	373	Right-handed alpha
Helix 42	AE6	B	376	394	Right-handed alpha
Helix 43	AE7	B	402	404	Right-handed 310
Helix 44	AE8	B	415	421	Right-handed alpha
Helix 45	AE9	B	424	433	Right-handed alpha
Helix 46	AF1	B	435	437	Right-handed 310
Helix 47	AF2	B	438	450	Right-handed alpha
Helix 48	AF3	B	469	473	Right-handed 310
Helix 49	AF4	B	474	483	Right-handed alpha
Helix 50	AF5	B	513	518	Right-handed 310
Helix 51	AF6	B	558	576	Right-handed alpha
Helix 52	AF7	C	129	137	Right-handed alpha
Helix 53	AF8	C	138	143	Right-handed alpha
Helix 54	AF9	C	144	147	Right-handed 310
Helix 55	AG1	C	150	156	Right-handed 310
Helix 56	AG2	C	163	186	Right-handed alpha
Helix 57	AG3	C	187	190	Right-handed 310
Helix 58	AG4	C	192	205	Right-handed alpha
Helix 59	AG5	C	214	221	Right-handed alpha
Helix 60	AG6	C	221	226	Right-handed alpha
Helix 61	AG7	C	232	248	Right-handed alpha
Helix 62	AG8	C	250	257	Right-handed alpha
Helix 63	AG9	C	260	273	Right-handed alpha
Helix 64	AH1	C	291	295	Right-handed 310
Helix 65	AH2	C	296	300	Right-handed 310
Helix 66	AH3	C	309	324	Right-handed alpha
Helix 67	AH4	C	330	337	Right-handed alpha
Helix 68	AH5	C	352	354	Right-handed 310
Helix 69	AH6	C	355	373	Right-handed alpha
Helix 70	AH7	C	376	393	Right-handed alpha
Helix 71	AH8	C	402	404	Right-handed 310
Helix 72	AH9	C	411	414	Right-handed 310
Helix 73	AI1	C	415	421	Right-handed alpha
Helix 74	AI2	C	424	432	Right-handed alpha
Helix 75	AI3	C	435	437	Right-handed 310
Helix 76	AI4	C	438	450	Right-handed alpha
Helix 77	AI5	C	469	473	Right-handed 310
Helix 78	AI6	C	474	483	Right-handed alpha
Helix 79	AI7	C	558	576	Right-handed alpha
Helix 80	AI8	D	129	137	Right-handed alpha
Helix 81	AI9	D	138	143	Right-handed alpha
Helix 82	AJ1	D	144	147	Right-handed 310
Helix 83	AJ2	D	163	186	Right-handed alpha
Helix 84	AJ3	D	187	190	Right-handed 310
Helix 85	AJ4	D	192	205	Right-handed alpha
Helix 86	AJ5	D	214	220	Right-handed alpha
Helix 87	AJ6	D	220	226	Right-handed alpha
Helix 88	AJ7	D	232	249	Right-handed alpha
Helix 89	AJ8	D	250	257	Right-handed alpha
Helix 90	AJ9	D	260	273	Right-handed alpha
Helix 91	AK1	D	291	300	Right-handed 310
Helix 92	AK2	D	309	324	Right-handed alpha
Helix 93	AK3	D	330	337	Right-handed alpha
Helix 94	AK4	D	355	373	Right-handed alpha
Helix 95	AK5	D	376	393	Right-handed alpha
Helix 96	AK6	D	402	404	Right-handed 310
Helix 97	AK7	D	409	414	Right-handed 310
Helix 98	AK8	D	415	421	Right-handed alpha
Helix 99	AK9	D	424	432	Right-handed alpha
Helix 100	AL1	D	435	437	Right-handed 310
Helix 101	AL2	D	438	450	Right-handed alpha
Helix 102	AL3	D	474	483	Right-handed alpha
Helix 103	AL4	D	494	496	Right-handed 310
Helix 104	AL5	D	513	518	Right-handed 310
Helix 105	AL6	D	558	575	Right-handed alpha

There are 16 sheets in PDB entry 8QXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	343	first strand
Strand 2	A	346	351	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	406	408	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	548	554	anti-parallel
Strand 3	A	498	504	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	125	128	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	342	first strand
Strand 2	B	347	352	anti-parallel
Strand 3	B	520	522	parallel
Strand 4	B	525	530	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	406	407	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	459	first strand
Strand 2	B	546	554	anti-parallel
Strand 3	B	498	506	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	126	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	342	first strand
Strand 2	C	347	350	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	406	407	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	459	first strand
Strand 2	C	548	553	anti-parallel
Strand 3	C	499	504	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	119	first strand
Strand 2	D	125	128	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	343	first strand
Strand 2	D	346	352	anti-parallel
Strand 3	D	520	521	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	400	first strand
Strand 2	D	406	407	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	456	first strand
Strand 2	D	546	554	anti-parallel
Strand 3	D	498	506	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QXO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QXO