Analysis of interatomic Contacts of Structural Units in PDB entry:
8QY4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QY4 entry

There are 6 chains in PDB entry 8QY4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 35	LEU 199
C	LEU 25	THR 607
D	PRO 35	LEU 199
F	LEU 25	THR 607
B	PRO 112	THR 317
E	PRO 112	THR 317

There are 28 helices in PDB entry 8QY4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	64	Right-handed alpha
Helix 2	AA2	A	81	86	Right-handed alpha
Helix 3	AA3	A	89	115	Right-handed alpha
Helix 4	AA4	A	116	123	Right-handed 310
Helix 5	AA5	A	124	148	Right-handed alpha
Helix 6	AA6	A	166	199	Right-handed alpha
Helix 7	AA7	C	51	59	Right-handed alpha
Helix 8	AA8	C	61	63	Right-handed 310
Helix 9	AA9	C	108	110	Right-handed 310
Helix 10	AB1	C	213	216	Right-handed 310
Helix 11	AB2	C	245	250	Right-handed alpha
Helix 12	AB3	C	271	276	Right-handed 310
Helix 13	AB4	C	353	358	Right-handed alpha
Helix 14	AB5	D	36	64	Right-handed alpha
Helix 15	AB6	D	81	86	Right-handed alpha
Helix 16	AB7	D	89	115	Right-handed alpha
Helix 17	AB8	D	116	123	Right-handed 310
Helix 18	AB9	D	124	148	Right-handed alpha
Helix 19	AC1	D	166	199	Right-handed alpha
Helix 20	AC2	F	51	59	Right-handed alpha
Helix 21	AC3	F	61	63	Right-handed 310
Helix 22	AC4	F	108	110	Right-handed 310
Helix 23	AC5	F	213	216	Right-handed 310
Helix 24	AC6	F	245	250	Right-handed alpha
Helix 25	AC7	F	271	276	Right-handed 310
Helix 26	AC8	F	353	358	Right-handed alpha
Helix 27	AC9	B	211	216	Right-handed alpha
Helix 28	AD1	E	211	216	Right-handed alpha

There are 38 sheets in PDB entry 8QY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	44	50	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	79	83	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	111	123	parallel
Strand 3	C	98	107	anti-parallel
Strand 4	C	65	69	anti-parallel
Strand 5	C	72	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	181	first strand
Strand 2	C	143	147	anti-parallel
Strand 3	C	130	137	anti-parallel
Strand 4	C	218	219	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	159	164	anti-parallel
Strand 3	C	192	200	anti-parallel
Strand 4	C	203	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	159	164	anti-parallel
Strand 3	C	192	200	anti-parallel
Strand 4	C	210	212	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	230	first strand
Strand 2	C	238	243	anti-parallel
Strand 3	C	281	284	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	253	261	anti-parallel
Strand 3	C	292	301	anti-parallel
Strand 4	C	315	318	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	334	first strand
Strand 2	C	342	350	anti-parallel
Strand 3	C	384	390	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	380	first strand
Strand 2	C	361	369	anti-parallel
Strand 3	C	394	402	anti-parallel
Strand 4	C	410	414	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	433	first strand
Strand 2	C	436	442	anti-parallel
Strand 3	C	477	479	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	472	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	489	498	anti-parallel
Strand 4	C	501	502	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	472	first strand
Strand 2	C	450	457	anti-parallel
Strand 3	C	489	498	anti-parallel
Strand 4	C	506	511	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	528	first strand
Strand 2	C	533	538	anti-parallel
Strand 3	C	574	577	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	569	first strand
Strand 2	C	551	558	anti-parallel
Strand 3	C	586	594	anti-parallel
Strand 4	C	597	600	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	569	first strand
Strand 2	C	551	558	anti-parallel
Strand 3	C	586	594	anti-parallel
Strand 4	C	604	606	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	32	first strand
Strand 2	F	44	50	anti-parallel
Strand 3	F	86	91	anti-parallel
Strand 4	F	79	83	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	39	first strand
Strand 2	F	111	123	parallel
Strand 3	F	98	107	anti-parallel
Strand 4	F	65	69	anti-parallel
Strand 5	F	72	73	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	181	first strand
Strand 2	F	143	147	anti-parallel
Strand 3	F	130	137	anti-parallel
Strand 4	F	218	219	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	168	first strand
Strand 2	F	159	164	anti-parallel
Strand 3	F	192	200	anti-parallel
Strand 4	F	203	206	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	173	first strand
Strand 2	F	159	164	anti-parallel
Strand 3	F	192	200	anti-parallel
Strand 4	F	210	212	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	230	first strand
Strand 2	F	238	243	anti-parallel
Strand 3	F	281	284	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	269	first strand
Strand 2	F	253	261	anti-parallel
Strand 3	F	292	301	anti-parallel
Strand 4	F	315	318	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	329	334	first strand
Strand 2	F	342	350	anti-parallel
Strand 3	F	384	390	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	375	380	first strand
Strand 2	F	361	369	anti-parallel
Strand 3	F	394	402	anti-parallel
Strand 4	F	410	414	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	426	433	first strand
Strand 2	F	436	442	anti-parallel
Strand 3	F	477	479	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	466	472	first strand
Strand 2	F	450	457	anti-parallel
Strand 3	F	489	498	anti-parallel
Strand 4	F	501	502	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	466	472	first strand
Strand 2	F	450	457	anti-parallel
Strand 3	F	489	498	anti-parallel
Strand 4	F	506	511	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	522	528	first strand
Strand 2	F	533	538	anti-parallel
Strand 3	F	574	577	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	569	first strand
Strand 2	F	551	558	anti-parallel
Strand 3	F	586	594	anti-parallel
Strand 4	F	597	600	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	569	first strand
Strand 2	F	551	558	anti-parallel
Strand 3	F	586	594	anti-parallel
Strand 4	F	604	606	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	127	133	anti-parallel
Strand 3	B	179	183	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	143	150	anti-parallel
Strand 3	B	191	198	anti-parallel
Strand 4	B	204	210	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	228	first strand
Strand 2	B	236	241	anti-parallel
Strand 3	B	277	280	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	254	262	anti-parallel
Strand 3	B	289	297	anti-parallel
Strand 4	B	311	313	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	121	first strand
Strand 2	E	127	133	anti-parallel
Strand 3	E	179	183	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	169	first strand
Strand 2	E	143	150	anti-parallel
Strand 3	E	191	198	anti-parallel
Strand 4	E	204	210	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	222	228	first strand
Strand 2	E	236	241	anti-parallel
Strand 3	E	277	280	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	271	first strand
Strand 2	E	254	262	anti-parallel
Strand 3	E	289	297	anti-parallel
Strand 4	E	311	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QY4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QY4