Analysis of interatomic Contacts of Structural Units in PDB entry:
8QY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QY5 entry

There are 6 chains in PDB entry 8QY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 24	THR 607
B	LEU 19	MET 184
C	GLU 96	TRP 296
E	LEU 19	MET 184
F	GLU 96	TRP 296
D	LEU 24	THR 607

There are 26 helices in PDB entry 8QY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	58	Right-handed alpha
Helix 2	AA2	A	61	63	Right-handed 310
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	213	216	Right-handed 310
Helix 5	AA5	A	245	250	Right-handed alpha
Helix 6	AA6	A	273	277	Right-handed 310
Helix 7	AA7	A	353	358	Right-handed alpha
Helix 8	AA8	B	20	47	Right-handed alpha
Helix 9	AA9	B	68	72	Right-handed 310
Helix 10	AB1	B	79	103	Right-handed alpha
Helix 11	AB2	B	108	129	Right-handed alpha
Helix 12	AB3	B	141	153	Right-handed alpha
Helix 13	AB4	B	155	183	Right-handed alpha
Helix 14	AB5	E	20	47	Right-handed alpha
Helix 15	AB6	E	68	72	Right-handed 310
Helix 16	AB7	E	79	103	Right-handed alpha
Helix 17	AB8	E	108	129	Right-handed alpha
Helix 18	AB9	E	141	153	Right-handed alpha
Helix 19	AC1	E	155	183	Right-handed alpha
Helix 20	AC2	D	51	58	Right-handed alpha
Helix 21	AC3	D	61	63	Right-handed 310
Helix 22	AC4	D	108	110	Right-handed 310
Helix 23	AC5	D	213	216	Right-handed 310
Helix 24	AC6	D	245	250	Right-handed alpha
Helix 25	AC7	D	273	277	Right-handed 310
Helix 26	AC8	D	353	358	Right-handed alpha

There are 44 sheets in PDB entry 8QY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	E	57	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	47	50	anti-parallel
Strand 3	A	86	89	anti-parallel
Strand 4	A	79	81	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	111	123	parallel
Strand 3	A	98	107	anti-parallel
Strand 4	A	65	69	anti-parallel
Strand 5	A	72	73	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	91	92	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	143	147	anti-parallel
Strand 3	A	130	137	anti-parallel
Strand 4	A	218	219	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	203	206	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	210	212	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	230	first strand
Strand 2	A	237	243	anti-parallel
Strand 3	A	281	285	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	253	261	anti-parallel
Strand 3	A	292	301	anti-parallel
Strand 4	A	315	318	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	334	first strand
Strand 2	A	342	350	anti-parallel
Strand 3	A	384	390	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	380	first strand
Strand 2	A	361	369	anti-parallel
Strand 3	A	394	402	anti-parallel
Strand 4	A	410	414	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	433	first strand
Strand 2	A	436	442	anti-parallel
Strand 3	A	477	479	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	472	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	489	498	anti-parallel
Strand 4	A	501	502	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	472	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	489	498	anti-parallel
Strand 4	A	506	511	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	528	first strand
Strand 2	A	533	537	anti-parallel
Strand 3	A	574	577	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	569	first strand
Strand 2	A	551	557	anti-parallel
Strand 3	A	586	594	anti-parallel
Strand 4	A	597	600	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	569	first strand
Strand 2	A	551	557	anti-parallel
Strand 3	A	586	594	anti-parallel
Strand 4	A	604	606	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	D	25	27	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	111	115	anti-parallel
Strand 3	C	154	159	anti-parallel
Strand 4	C	147	149	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	145	first strand
Strand 2	C	126	134	anti-parallel
Strand 3	C	168	176	anti-parallel
Strand 4	C	182	183	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	145	first strand
Strand 2	C	126	134	anti-parallel
Strand 3	C	168	176	anti-parallel
Strand 4	C	187	190	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	207	first strand
Strand 2	C	215	220	anti-parallel
Strand 3	C	257	260	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	250	first strand
Strand 2	C	232	240	anti-parallel
Strand 3	C	269	277	anti-parallel
Strand 4	C	291	293	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	103	first strand
Strand 2	F	111	115	anti-parallel
Strand 3	F	154	159	anti-parallel
Strand 4	F	147	149	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	145	first strand
Strand 2	F	126	134	anti-parallel
Strand 3	F	168	176	anti-parallel
Strand 4	F	182	183	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	145	first strand
Strand 2	F	126	134	anti-parallel
Strand 3	F	168	176	anti-parallel
Strand 4	F	187	190	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	201	207	first strand
Strand 2	F	215	220	anti-parallel
Strand 3	F	257	260	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	250	first strand
Strand 2	F	232	240	anti-parallel
Strand 3	F	269	277	anti-parallel
Strand 4	F	291	293	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	47	50	anti-parallel
Strand 3	D	86	89	anti-parallel
Strand 4	D	79	81	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	111	123	parallel
Strand 3	D	98	107	anti-parallel
Strand 4	D	65	69	anti-parallel
Strand 5	D	72	73	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	44	first strand
Strand 2	D	91	92	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	181	first strand
Strand 2	D	143	147	anti-parallel
Strand 3	D	130	137	anti-parallel
Strand 4	D	218	219	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	157	163	anti-parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	203	206	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	157	163	anti-parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	210	212	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	230	first strand
Strand 2	D	237	243	anti-parallel
Strand 3	D	281	285	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	253	261	anti-parallel
Strand 3	D	292	301	anti-parallel
Strand 4	D	315	318	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	334	first strand
Strand 2	D	342	350	anti-parallel
Strand 3	D	384	390	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	380	first strand
Strand 2	D	361	369	anti-parallel
Strand 3	D	394	402	anti-parallel
Strand 4	D	410	414	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	433	first strand
Strand 2	D	436	442	anti-parallel
Strand 3	D	477	479	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	467	472	first strand
Strand 2	D	450	457	anti-parallel
Strand 3	D	489	498	anti-parallel
Strand 4	D	501	502	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	467	472	first strand
Strand 2	D	450	457	anti-parallel
Strand 3	D	489	498	anti-parallel
Strand 4	D	506	511	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	528	first strand
Strand 2	D	533	537	anti-parallel
Strand 3	D	574	577	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	569	first strand
Strand 2	D	551	557	anti-parallel
Strand 3	D	586	594	anti-parallel
Strand 4	D	597	600	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	569	first strand
Strand 2	D	551	557	anti-parallel
Strand 3	D	586	594	anti-parallel
Strand 4	D	604	606	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QY5