Analysis of interatomic Contacts of Structural Units in PDB entry:
8QY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QY7 entry

There is 1 chain in PDB entry 8QY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 21GLY 1079
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8QY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 38Right-handed 310
Helix 2
AA2
A
43 56Right-handed alpha
Helix 3
AA3
A
70 79Right-handed alpha
Helix 4
AA4
A
85 89Right-handed 310
Helix 5
AA5
A
147 165Right-handed alpha
Helix 6
AA6
A
169 188Right-handed alpha
Helix 7
AA7
A
192 197Right-handed alpha
Helix 8
AA8
A
233 241Right-handed alpha
Helix 9
AA9
A
263 276Right-handed alpha
Helix 10
AB1
A
283 292Right-handed alpha
Helix 11
AB2
A
292 298Right-handed alpha
Helix 12
AB3
A
300 305Right-handed alpha
Helix 13
AB4
A
306 317Right-handed alpha
Helix 14
AB5
A
360 377Right-handed alpha
Helix 15
AB6
A
395 414Right-handed alpha
Helix 16
AB7
A
581 596Right-handed alpha
Helix 17
AB8
A
614 630Right-handed alpha
Helix 18
AB9
A
641 656Right-handed alpha
Helix 19
AC1
A
657 661Right-handed 310
Helix 20
AC2
A
668 674Right-handed alpha
Helix 21
AC3
A
682 688Right-handed alpha
Helix 22
AC4
A
708 715Right-handed alpha
Helix 23
AC5
A
715 722Right-handed alpha
Helix 24
AC6
A
732 736Right-handed 310
Helix 25
AC7
A
740 749Right-handed alpha
Helix 26
AC8
A
765 777Right-handed alpha
Helix 27
AC9
A
783 792Right-handed alpha
Helix 28
AD1
A
804 814Right-handed alpha
Helix 29
AD2
A
836 840Right-handed 310
Helix 30
AD3
A
844 864Right-handed alpha
Helix 31
AD4
A
875 888Right-handed alpha
Helix 32
AD5
A
888 893Right-handed alpha
Helix 33
AD6
A
895 900Right-handed alpha
Helix 34
AD7
A
902 919Right-handed alpha
Helix 35
AD8
A
929 945Right-handed alpha
Helix 36
AD9
A
959 975Right-handed alpha
Helix 37
AE1
A
1008 1017Right-handed alpha
Helix 38
AE2
A
1042 1059Right-handed alpha
Helix 39
AE3
A
1069 1073Right-handed 310
Helix 40
AE4
A
1074 1079Right-handed alpha
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There are 9 sheets in PDB entry 8QY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
30 34anti-parallel
Strand 3
A
65 69anti-parallel
Strand 4
A
60 61anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 104first strand
Strand 2
A
113 121anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
136 138anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
257 261parallel
Strand 3
A
247 251anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 214first strand
Strand 2
A
219 226anti-parallel
Strand 3
A
280 281anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
321 328anti-parallel
Strand 4
A
387 390parallel
Strand 5
A
381 384anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 666first strand
Strand 2
A
704 707parallel
Strand 3
A
636 639parallel
Strand 4
A
724 730parallel
Strand 5
A
751 757parallel
Strand 6
A
604 607parallel
Strand 7
A
817 818parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 834first strand
Strand 2
A
1028 1031parallel
Strand 3
A
997 1002parallel
Strand 4
A
922 926parallel
Strand 5
A
979 983parallel
Strand 6
A
949 951parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 842first strand
Strand 2
A
1035 1036parallel
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