Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QYG entry

There are 2 chains in PDB entry 8QYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 221
B
 HIS -3VAL 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8QYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 15Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
44 48Right-handed 310
Helix 4
AA4
A
58 67Right-handed alpha
Helix 5
AA5
A
68 73Right-handed 310
Helix 6
AA6
A
74 79Right-handed alpha
Helix 7
AA7
A
89 94Right-handed alpha
Helix 8
AA8
A
97 107Right-handed alpha
Helix 9
AA9
A
111 129Right-handed alpha
Helix 10
AB1
A
135 161Right-handed alpha
Helix 11
AB2
A
172 183Right-handed alpha
Helix 12
AB3
A
213 217Right-handed alpha
Helix 13
AB4
B
-2 15Right-handed alpha
Helix 14
AB5
B
28 41Right-handed alpha
Helix 15
AB6
B
44 48Right-handed 310
Helix 16
AB7
B
58 67Right-handed alpha
Helix 17
AB8
B
68 73Right-handed 310
Helix 18
AB9
B
74 79Right-handed alpha
Helix 19
AC1
B
89 94Right-handed alpha
Helix 20
AC2
B
97 107Right-handed alpha
Helix 21
AC3
B
111 128Right-handed alpha
Helix 22
AC4
B
131 134Right-handed 310
Helix 23
AC5
B
135 161Right-handed alpha
Helix 24
AC6
B
172 183Right-handed alpha
Helix 25
AC7
B
213 217Right-handed alpha
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There are 2 sheets in PDB entry 8QYG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 168first strand
Strand 2
A
191 200anti-parallel
Strand 3
A
81 88anti-parallel
Strand 4
A
51 56anti-parallel
Strand 5
B
218 221parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
B
51 56parallel
Strand 3
B
81 88anti-parallel
Strand 4
B
191 200anti-parallel
Strand 5
B
164 168anti-parallel
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