Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QYJ entry

There are 13 chains in PDB entry 8QYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 6	ILE 233
B	THR 10	GLU 248
C	ALA 6	LYS 241
D	MET 1	ILE 241
E	MET 1	ARG 239
F	GLY 5	LEU 244
G	ALA 7	ALA 243
H	MET 62	GLY 113
I	ASP 34	THR 288
J	MET 1	PHE 264
K	GLY 48	SER 155
L	PRO 5	TRP 122
M	ASP 11	PHE 123

There are 84 helices in PDB entry 8QYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	79	102	Right-handed alpha
Helix 3	AA3	A	106	121	Right-handed alpha
Helix 4	AA4	A	166	177	Right-handed alpha
Helix 5	AA5	A	183	197	Right-handed alpha
Helix 6	AA6	A	222	233	Right-handed alpha
Helix 7	AA7	B	18	29	Right-handed alpha
Helix 8	AA8	B	79	102	Right-handed alpha
Helix 9	AA9	B	106	121	Right-handed alpha
Helix 10	AB1	B	167	179	Right-handed alpha
Helix 11	AB2	B	185	201	Right-handed alpha
Helix 12	AB3	B	229	248	Right-handed alpha
Helix 13	AB4	C	16	27	Right-handed alpha
Helix 14	AB5	C	55	60	Right-handed 310
Helix 15	AB6	C	76	99	Right-handed alpha
Helix 16	AB7	C	103	117	Right-handed alpha
Helix 17	AB8	C	118	120	Right-handed 310
Helix 18	AB9	C	164	176	Right-handed alpha
Helix 19	AC1	C	183	196	Right-handed alpha
Helix 20	AC2	C	201	204	Right-handed 310
Helix 21	AC3	C	221	241	Right-handed alpha
Helix 22	AC4	D	21	30	Right-handed alpha
Helix 23	AC5	D	31	34	Right-handed 310
Helix 24	AC6	D	60	64	Right-handed 310
Helix 25	AC7	D	84	104	Right-handed alpha
Helix 26	AC8	D	108	121	Right-handed alpha
Helix 27	AC9	D	173	183	Right-handed alpha
Helix 28	AD1	D	190	206	Right-handed alpha
Helix 29	AD2	D	230	239	Right-handed alpha
Helix 30	AD3	E	3	7	Right-handed 310
Helix 31	AD4	E	19	27	Right-handed alpha
Helix 32	AD5	E	28	32	Right-handed 310
Helix 33	AD6	E	78	100	Right-handed alpha
Helix 34	AD7	E	104	118	Right-handed alpha
Helix 35	AD8	E	119	121	Right-handed 310
Helix 36	AD9	E	165	175	Right-handed alpha
Helix 37	AE1	E	176	179	Right-handed 310
Helix 38	AE2	E	183	197	Right-handed alpha
Helix 39	AE3	E	225	228	Right-handed 310
Helix 40	AE4	E	229	234	Right-handed alpha
Helix 41	AE5	F	21	30	Right-handed alpha
Helix 42	AE6	F	81	104	Right-handed alpha
Helix 43	AE7	F	108	122	Right-handed alpha
Helix 44	AE8	F	169	178	Right-handed alpha
Helix 45	AE9	F	179	180	Right-handed 310
Helix 46	AF1	F	181	185	Right-handed 310
Helix 47	AF2	F	186	201	Right-handed alpha
Helix 48	AF3	F	220	222	Right-handed 310
Helix 49	AF4	F	229	244	Right-handed alpha
Helix 50	AF5	G	22	31	Right-handed alpha
Helix 51	AF6	G	32	35	Right-handed 310
Helix 52	AF7	G	62	66	Right-handed 310
Helix 53	AF8	G	83	106	Right-handed alpha
Helix 54	AF9	G	110	125	Right-handed alpha
Helix 55	AG1	G	171	186	Right-handed alpha
Helix 56	AG2	G	190	207	Right-handed alpha
Helix 57	AG3	G	231	243	Right-handed alpha
Helix 58	AG4	H	63	71	Right-handed alpha
Helix 59	AG5	H	73	87	Right-handed alpha
Helix 60	AG6	H	99	107	Right-handed alpha
Helix 61	AG7	I	35	45	Right-handed alpha
Helix 62	AG8	I	61	66	Right-handed alpha
Helix 63	AG9	I	76	87	Right-handed alpha
Helix 64	AH1	I	145	154	Right-handed alpha
Helix 65	AH2	I	173	175	Right-handed 310
Helix 66	AH3	I	180	184	Right-handed 310
Helix 67	AH4	I	214	226	Right-handed alpha
Helix 68	AH5	I	243	249	Right-handed alpha
Helix 69	AH6	I	250	256	Right-handed 310
Helix 70	AH7	I	265	277	Right-handed alpha
Helix 71	AH8	J	23	25	Right-handed 310
Helix 72	AH9	J	26	40	Right-handed alpha
Helix 73	AI1	J	99	114	Right-handed alpha
Helix 74	AI2	J	132	136	Right-handed 310
Helix 75	AI3	J	148	159	Right-handed alpha
Helix 76	AI4	J	186	198	Right-handed alpha
Helix 77	AI5	J	213	229	Right-handed alpha
Helix 78	AI6	K	98	114	Right-handed alpha
Helix 79	AI7	K	118	130	Right-handed alpha
Helix 80	AI8	L	72	90	Right-handed alpha
Helix 81	AI9	L	105	119	Right-handed alpha
Helix 82	AJ1	M	74	88	Right-handed alpha
Helix 83	AJ2	M	103	119	Right-handed alpha
Helix 84	AJ3	M	120	123	Right-handed 310

There are 22 sheets in PDB entry 8QYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	44	49	anti-parallel
Strand 4	A	208	214	anti-parallel
Strand 5	A	217	220	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	132	139	anti-parallel
Strand 4	A	144	149	anti-parallel
Strand 5	A	155	157	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	211	218	anti-parallel
Strand 5	B	223	227	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	72	78	anti-parallel
Strand 3	B	132	140	anti-parallel
Strand 4	B	144	150	anti-parallel
Strand 5	B	156	158	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	32	36	anti-parallel
Strand 3	C	40	46	anti-parallel
Strand 4	C	206	212	anti-parallel
Strand 5	C	218	219	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	69	75	anti-parallel
Strand 3	C	129	136	anti-parallel
Strand 4	C	142	147	anti-parallel
Strand 5	C	153	155	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	37	41	anti-parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	215	220	anti-parallel
Strand 5	D	227	228	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	74	80	anti-parallel
Strand 3	D	139	147	anti-parallel
Strand 4	D	150	156	anti-parallel
Strand 5	D	162	164	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	43	49	anti-parallel
Strand 4	E	210	216	anti-parallel
Strand 5	E	219	224	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	65	first strand
Strand 2	E	70	77	anti-parallel
Strand 3	E	130	138	anti-parallel
Strand 4	E	141	147	anti-parallel
Strand 5	E	153	155	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	65	first strand
Strand 2	E	70	77	anti-parallel
Strand 3	I	287	288	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	166	first strand
Strand 2	F	37	42	anti-parallel
Strand 3	F	45	53	anti-parallel
Strand 4	F	210	218	anti-parallel
Strand 5	F	225	227	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	75	80	anti-parallel
Strand 3	F	134	142	anti-parallel
Strand 4	F	146	152	anti-parallel
Strand 5	F	158	160	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	169	first strand
Strand 2	G	38	43	anti-parallel
Strand 3	G	47	53	anti-parallel
Strand 4	G	215	221	anti-parallel
Strand 5	G	228	229	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	73	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	136	144	anti-parallel
Strand 4	G	148	153	anti-parallel
Strand 5	G	161	163	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	50	first strand
Strand 2	I	93	100	anti-parallel
Strand 3	I	121	126	anti-parallel
Strand 4	I	132	137	anti-parallel
Strand 5	I	70	75	parallel
Strand 6	I	163	171	parallel
Strand 7	I	230	237	parallel
Strand 8	I	188	193	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	212	213	first strand
Strand 2	J	55	57	anti-parallel
Strand 3	J	72	73	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	4	first strand
Strand 2	J	42	47	anti-parallel
Strand 3	J	75	80	anti-parallel
Strand 4	J	85	90	anti-parallel
Strand 5	J	16	20	parallel
Strand 6	J	117	121	parallel
Strand 7	J	201	208	parallel
Strand 8	J	124	125	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	4	first strand
Strand 2	J	42	47	anti-parallel
Strand 3	J	75	80	anti-parallel
Strand 4	J	85	90	anti-parallel
Strand 5	J	16	20	parallel
Strand 6	J	117	121	parallel
Strand 7	J	201	208	parallel
Strand 8	J	139	143	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	81	first strand
Strand 2	K	84	86	anti-parallel
Strand 3	K	143	147	anti-parallel
Strand 4	K	150	154	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	16	first strand
Strand 2	L	19	27	anti-parallel
Strand 3	L	31	37	anti-parallel
Strand 4	L	94	100	parallel
Strand 5	L	44	50	anti-parallel
Strand 6	L	62	68	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	13	21	first strand
Strand 2	M	24	33	anti-parallel
Strand 3	M	36	42	anti-parallel
Strand 4	M	90	95	parallel
Strand 5	M	50	54	anti-parallel
Strand 6	M	63	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYJ