Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QYM entry

There are 13 chains in PDB entry 8QYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	ILE 233
B	ARG 3	LYS 251
C	SER 2	GLU 238
D	MET 1	ILE 241
E	MET 1	ARG 239
F	GLY 5	LEU 244
G	SER 2	ALA 243
H	PRO 44	LEU 141
I	ALA 2	THR 288
J	MET 1	PHE 264
K	VAL 4	UNK 262
L	TYR 6	ALA 202
M	GLU 2	ILE 194

There are 95 helices in PDB entry 8QYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	79	102	Right-handed alpha
Helix 3	AA3	A	106	121	Right-handed alpha
Helix 4	AA4	A	167	178	Right-handed alpha
Helix 5	AA5	A	183	198	Right-handed alpha
Helix 6	AA6	A	222	233	Right-handed alpha
Helix 7	AA7	B	18	27	Right-handed alpha
Helix 8	AA8	B	28	31	Right-handed 310
Helix 9	AA9	B	79	102	Right-handed alpha
Helix 10	AB1	B	106	121	Right-handed alpha
Helix 11	AB2	B	167	178	Right-handed alpha
Helix 12	AB3	B	185	201	Right-handed alpha
Helix 13	AB4	B	207	209	Right-handed 310
Helix 14	AB5	B	229	250	Right-handed alpha
Helix 15	AB6	C	16	27	Right-handed alpha
Helix 16	AB7	C	55	60	Right-handed 310
Helix 17	AB8	C	76	98	Right-handed alpha
Helix 18	AB9	C	103	118	Right-handed alpha
Helix 19	AC1	C	164	176	Right-handed alpha
Helix 20	AC2	C	183	197	Right-handed alpha
Helix 21	AC3	C	201	204	Right-handed 310
Helix 22	AC4	C	221	238	Right-handed alpha
Helix 23	AC5	D	21	30	Right-handed alpha
Helix 24	AC6	D	31	34	Right-handed 310
Helix 25	AC7	D	82	84	Right-handed 310
Helix 26	AC8	D	85	104	Right-handed alpha
Helix 27	AC9	D	108	121	Right-handed alpha
Helix 28	AD1	D	173	184	Right-handed alpha
Helix 29	AD2	D	190	206	Right-handed alpha
Helix 30	AD3	D	230	241	Right-handed alpha
Helix 31	AD4	E	19	27	Right-handed alpha
Helix 32	AD5	E	28	32	Right-handed 310
Helix 33	AD6	E	77	99	Right-handed alpha
Helix 34	AD7	E	104	118	Right-handed alpha
Helix 35	AD8	E	119	121	Right-handed 310
Helix 36	AD9	E	165	175	Right-handed alpha
Helix 37	AE1	E	176	179	Right-handed 310
Helix 38	AE2	E	183	197	Right-handed alpha
Helix 39	AE3	E	225	228	Right-handed 310
Helix 40	AE4	E	229	234	Right-handed alpha
Helix 41	AE5	F	21	30	Right-handed alpha
Helix 42	AE6	F	31	34	Right-handed 310
Helix 43	AE7	F	81	104	Right-handed alpha
Helix 44	AE8	F	108	122	Right-handed alpha
Helix 45	AE9	F	123	125	Right-handed 310
Helix 46	AF1	F	171	178	Right-handed alpha
Helix 47	AF2	F	179	180	Right-handed 310
Helix 48	AF3	F	181	185	Right-handed 310
Helix 49	AF4	F	186	202	Right-handed alpha
Helix 50	AF5	F	220	222	Right-handed 310
Helix 51	AF6	F	229	244	Right-handed alpha
Helix 52	AF7	G	22	28	Right-handed alpha
Helix 53	AF8	G	62	66	Right-handed 310
Helix 54	AF9	G	83	106	Right-handed alpha
Helix 55	AG1	G	110	125	Right-handed alpha
Helix 56	AG2	G	171	186	Right-handed alpha
Helix 57	AG3	G	190	207	Right-handed alpha
Helix 58	AG4	G	231	243	Right-handed alpha
Helix 59	AG5	H	46	54	Right-handed alpha
Helix 60	AG6	H	55	71	Right-handed alpha
Helix 61	AG7	H	73	88	Right-handed alpha
Helix 62	AG8	H	99	107	Right-handed alpha
Helix 63	AG9	H	108	111	Right-handed 310
Helix 64	AH1	H	129	138	Right-handed alpha
Helix 65	AH2	I	34	45	Right-handed alpha
Helix 66	AH3	I	61	66	Right-handed alpha
Helix 67	AH4	I	76	87	Right-handed alpha
Helix 68	AH5	I	145	154	Right-handed alpha
Helix 69	AH6	I	173	175	Right-handed 310
Helix 70	AH7	I	180	184	Right-handed 310
Helix 71	AH8	I	214	226	Right-handed alpha
Helix 72	AH9	I	243	249	Right-handed alpha
Helix 73	AI1	I	250	256	Right-handed 310
Helix 74	AI2	I	259	263	Right-handed 310
Helix 75	AI3	I	265	278	Right-handed alpha
Helix 76	AI4	J	23	25	Right-handed 310
Helix 77	AI5	J	26	40	Right-handed alpha
Helix 78	AI6	J	98	114	Right-handed alpha
Helix 79	AI7	J	130	135	Right-handed alpha
Helix 80	AI8	J	148	159	Right-handed alpha
Helix 81	AI9	J	186	198	Right-handed alpha
Helix 82	AJ1	J	213	229	Right-handed alpha
Helix 83	AJ2	K	18	31	Right-handed alpha
Helix 84	AJ3	K	92	114	Right-handed alpha
Helix 85	AJ4	K	118	133	Right-handed alpha
Helix 86	AJ5	K	173	185	Right-handed alpha
Helix 87	AJ6	K	190	205	Right-handed alpha
Helix 88	AJ7	L	56	79	Right-handed alpha
Helix 89	AJ8	L	83	97	Right-handed alpha
Helix 90	AJ9	L	142	154	Right-handed alpha
Helix 91	AK1	L	159	173	Right-handed alpha
Helix 92	AK2	M	52	72	Right-handed alpha
Helix 93	AK3	M	76	93	Right-handed alpha
Helix 94	AK4	M	137	147	Right-handed alpha
Helix 95	AK5	M	152	169	Right-handed alpha

There are 28 sheets in PDB entry 8QYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	44	49	anti-parallel
Strand 4	A	208	214	anti-parallel
Strand 5	A	217	220	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	72	78	anti-parallel
Strand 3	A	132	140	anti-parallel
Strand 4	A	143	149	anti-parallel
Strand 5	A	155	157	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	211	219	anti-parallel
Strand 5	B	222	227	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	72	78	anti-parallel
Strand 3	B	132	140	anti-parallel
Strand 4	B	144	150	anti-parallel
Strand 5	B	156	158	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	32	36	anti-parallel
Strand 3	C	40	46	anti-parallel
Strand 4	C	206	212	anti-parallel
Strand 5	C	218	219	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	69	75	anti-parallel
Strand 3	C	129	136	anti-parallel
Strand 4	C	142	147	anti-parallel
Strand 5	C	153	155	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	37	41	anti-parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	215	220	anti-parallel
Strand 5	D	227	228	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	139	145	anti-parallel
Strand 3	D	78	80	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	139	145	anti-parallel
Strand 3	D	152	156	anti-parallel
Strand 4	D	162	165	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	44	49	anti-parallel
Strand 4	E	210	215	anti-parallel
Strand 5	E	222	224	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	65	first strand
Strand 2	E	70	76	anti-parallel
Strand 3	E	130	138	anti-parallel
Strand 4	E	141	147	anti-parallel
Strand 5	E	153	155	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	166	first strand
Strand 2	F	37	41	anti-parallel
Strand 3	F	45	53	anti-parallel
Strand 4	F	210	218	anti-parallel
Strand 5	F	226	227	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	75	80	anti-parallel
Strand 3	F	134	140	anti-parallel
Strand 4	F	148	152	anti-parallel
Strand 5	F	158	160	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	I	9	10	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	169	first strand
Strand 2	G	38	43	anti-parallel
Strand 3	G	47	53	anti-parallel
Strand 4	G	215	221	anti-parallel
Strand 5	G	228	229	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	73	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	136	144	anti-parallel
Strand 4	G	148	154	anti-parallel
Strand 5	G	160	162	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	57	first strand
Strand 2	I	48	51	anti-parallel
Strand 3	I	93	100	anti-parallel
Strand 4	I	121	126	anti-parallel
Strand 5	I	132	137	anti-parallel
Strand 6	I	70	75	parallel
Strand 7	I	163	171	parallel
Strand 8	I	230	237	parallel
Strand 9	I	188	193	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	212	213	first strand
Strand 2	J	55	56	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1	4	first strand
Strand 2	J	42	48	anti-parallel
Strand 3	J	75	80	anti-parallel
Strand 4	J	85	90	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	20	first strand
Strand 2	J	118	121	parallel
Strand 3	J	201	208	parallel
Strand 4	J	124	125	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	20	first strand
Strand 2	J	118	121	parallel
Strand 3	J	201	208	parallel
Strand 4	J	139	143	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	42	first strand
Strand 2	K	84	91	anti-parallel
Strand 3	K	77	81	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	42	first strand
Strand 2	K	84	91	anti-parallel
Strand 3	K	139	146	anti-parallel
Strand 4	K	151	156	anti-parallel
Strand 5	K	162	164	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	167	170	first strand
Strand 2	K	46	51	anti-parallel
Strand 3	K	54	60	anti-parallel
Strand 4	K	216	222	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	256	261	first strand
Strand 2	L	194	200	anti-parallel
Strand 3	L	184	190	anti-parallel
Strand 4	L	20	26	anti-parallel
Strand 5	L	10	15	anti-parallel
Strand 6	L	136	140	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	44	first strand
Strand 2	L	49	52	anti-parallel
Strand 3	L	108	112	anti-parallel
Strand 4	L	119	123	anti-parallel
Strand 5	L	131	132	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	131	first strand
Strand 2	M	5	8	anti-parallel
Strand 3	M	13	16	anti-parallel
Strand 4	M	179	183	anti-parallel
Strand 5	M	188	193	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	39	first strand
Strand 2	M	42	48	anti-parallel
Strand 3	M	100	107	anti-parallel
Strand 4	M	113	118	anti-parallel
Strand 5	M	124	126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYM