Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QYN entry

There are 17 chains in PDB entry 8QYN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	ALA 234
B	SER 2	GLU 248
C	SER 2	LYS 234
D	MET 1	ILE 241
E	MET 1	PRO 240
F	ILE 4	LYS 245
G	SER 2	GLU 244
H	MET 1	LEU 141
I	ALA 2	THR 288
J	MET 1	PHE 264
K	ALA 2	UNK 262
L	TYR 6	ARG 203
M	MET 1	PRO 197
N	MET 1	SER 247
O	PHE 30	LEU 238
P	ASN 48	LEU 248
Q	ALA 16	GLY 225

There are124 helices in PDB entry 8QYN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	7	Right-handed 310
Helix 2	AA2	A	19	30	Right-handed alpha
Helix 3	AA3	A	80	102	Right-handed alpha
Helix 4	AA4	A	106	120	Right-handed alpha
Helix 5	AA5	A	121	123	Right-handed 310
Helix 6	AA6	A	166	177	Right-handed alpha
Helix 7	AA7	A	183	199	Right-handed alpha
Helix 8	AA8	A	222	234	Right-handed alpha
Helix 9	AA9	B	18	27	Right-handed alpha
Helix 10	AB1	B	28	31	Right-handed 310
Helix 11	AB2	B	79	102	Right-handed alpha
Helix 12	AB3	B	106	121	Right-handed alpha
Helix 13	AB4	B	167	179	Right-handed alpha
Helix 14	AB5	B	185	201	Right-handed alpha
Helix 15	AB6	B	229	248	Right-handed alpha
Helix 16	AB7	C	16	25	Right-handed alpha
Helix 17	AB8	C	26	29	Right-handed 310
Helix 18	AB9	C	55	60	Right-handed 310
Helix 19	AC1	C	76	98	Right-handed alpha
Helix 20	AC2	C	103	117	Right-handed alpha
Helix 21	AC3	C	118	120	Right-handed 310
Helix 22	AC4	C	164	176	Right-handed alpha
Helix 23	AC5	C	183	196	Right-handed alpha
Helix 24	AC6	C	221	234	Right-handed alpha
Helix 25	AC7	D	21	30	Right-handed alpha
Helix 26	AC8	D	31	34	Right-handed 310
Helix 27	AC9	D	60	64	Right-handed 310
Helix 28	AD1	D	81	104	Right-handed alpha
Helix 29	AD2	D	108	121	Right-handed alpha
Helix 30	AD3	D	173	183	Right-handed alpha
Helix 31	AD4	D	190	206	Right-handed alpha
Helix 32	AD5	D	230	239	Right-handed alpha
Helix 33	AD6	E	19	26	Right-handed alpha
Helix 34	AD7	E	27	32	Right-handed 310
Helix 35	AD8	E	78	100	Right-handed alpha
Helix 36	AD9	E	104	118	Right-handed alpha
Helix 37	AE1	E	119	121	Right-handed 310
Helix 38	AE2	E	165	175	Right-handed alpha
Helix 39	AE3	E	176	182	Right-handed 310
Helix 40	AE4	E	183	196	Right-handed alpha
Helix 41	AE5	E	197	199	Right-handed 310
Helix 42	AE6	E	225	228	Right-handed 310
Helix 43	AE7	E	229	234	Right-handed alpha
Helix 44	AE8	F	21	31	Right-handed alpha
Helix 45	AE9	F	32	34	Right-handed 310
Helix 46	AF1	F	81	104	Right-handed alpha
Helix 47	AF2	F	108	122	Right-handed alpha
Helix 48	AF3	F	123	125	Right-handed 310
Helix 49	AF4	F	169	178	Right-handed alpha
Helix 50	AF5	F	179	180	Right-handed 310
Helix 51	AF6	F	181	185	Right-handed 310
Helix 52	AF7	F	186	202	Right-handed alpha
Helix 53	AF8	F	229	245	Right-handed alpha
Helix 54	AF9	G	22	31	Right-handed alpha
Helix 55	AG1	G	32	35	Right-handed 310
Helix 56	AG2	G	62	66	Right-handed 310
Helix 57	AG3	G	83	106	Right-handed alpha
Helix 58	AG4	G	110	125	Right-handed alpha
Helix 59	AG5	G	126	128	Right-handed 310
Helix 60	AG6	G	171	186	Right-handed alpha
Helix 61	AG7	G	190	207	Right-handed alpha
Helix 62	AG8	G	231	244	Right-handed alpha
Helix 63	AG9	H	37	43	Right-handed alpha
Helix 64	AH1	H	48	54	Right-handed alpha
Helix 65	AH2	H	54	71	Right-handed alpha
Helix 66	AH3	H	73	87	Right-handed alpha
Helix 67	AH4	H	99	107	Right-handed alpha
Helix 68	AH5	H	113	118	Right-handed alpha
Helix 69	AH6	H	120	124	Right-handed 310
Helix 70	AH7	H	129	139	Right-handed alpha
Helix 71	AH8	I	17	22	Right-handed alpha
Helix 72	AH9	I	32	45	Right-handed alpha
Helix 73	AI1	I	61	66	Right-handed alpha
Helix 74	AI2	I	76	87	Right-handed alpha
Helix 75	AI3	I	145	155	Right-handed alpha
Helix 76	AI4	I	173	175	Right-handed 310
Helix 77	AI5	I	180	184	Right-handed 310
Helix 78	AI6	I	214	226	Right-handed alpha
Helix 79	AI7	I	243	249	Right-handed alpha
Helix 80	AI8	I	250	256	Right-handed 310
Helix 81	AI9	I	265	278	Right-handed alpha
Helix 82	AJ1	J	23	25	Right-handed 310
Helix 83	AJ2	J	26	40	Right-handed alpha
Helix 84	AJ3	J	99	114	Right-handed alpha
Helix 85	AJ4	J	127	129	Right-handed 310
Helix 86	AJ5	J	131	135	Right-handed 310
Helix 87	AJ6	J	148	159	Right-handed alpha
Helix 88	AJ7	J	186	198	Right-handed alpha
Helix 89	AJ8	J	213	229	Right-handed alpha
Helix 90	AJ9	K	18	33	Right-handed alpha
Helix 91	AK1	K	92	114	Right-handed alpha
Helix 92	AK2	K	118	133	Right-handed alpha
Helix 93	AK3	K	173	184	Right-handed alpha
Helix 94	AK4	K	190	204	Right-handed alpha
Helix 95	AK5	K	224	226	Right-handed 310
Helix 96	AK6	L	56	79	Right-handed alpha
Helix 97	AK7	L	83	96	Right-handed alpha
Helix 98	AK8	L	97	99	Right-handed 310
Helix 99	AK9	L	142	154	Right-handed alpha
Helix 100	AL1	L	159	173	Right-handed alpha
Helix 101	AL2	M	52	72	Right-handed alpha
Helix 102	AL3	M	76	95	Right-handed alpha
Helix 103	AL4	M	135	147	Right-handed alpha
Helix 104	AL5	M	152	169	Right-handed alpha
Helix 105	AL6	N	1	7	Right-handed alpha
Helix 106	AL7	N	107	130	Right-handed alpha
Helix 107	AL8	N	134	148	Right-handed alpha
Helix 108	AL9	N	190	201	Right-handed alpha
Helix 109	AM1	N	207	223	Right-handed alpha
Helix 110	AM2	O	85	108	Right-handed alpha
Helix 111	AM3	O	112	126	Right-handed alpha
Helix 112	AM4	O	167	171	Right-handed 310
Helix 113	AM5	O	173	180	Right-handed alpha
Helix 114	AM6	O	195	212	Right-handed alpha
Helix 115	AM7	P	101	123	Right-handed alpha
Helix 116	AM8	P	129	147	Right-handed alpha
Helix 117	AM9	P	187	202	Right-handed alpha
Helix 118	AN1	P	206	225	Right-handed alpha
Helix 119	AN2	Q	17	21	Right-handed alpha
Helix 120	AN3	Q	25	29	Right-handed 310
Helix 121	AN4	Q	82	105	Right-handed alpha
Helix 122	AN5	Q	109	124	Right-handed alpha
Helix 123	AN6	Q	169	177	Right-handed alpha
Helix 124	AN7	Q	182	199	Right-handed alpha

There are 36 sheets in PDB entry 8QYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	44	49	anti-parallel
Strand 4	A	208	214	anti-parallel
Strand 5	A	217	220	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	132	139	anti-parallel
Strand 4	A	144	149	anti-parallel
Strand 5	A	155	157	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	211	218	anti-parallel
Strand 5	B	223	227	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	72	78	anti-parallel
Strand 3	B	132	140	anti-parallel
Strand 4	B	144	150	anti-parallel
Strand 5	B	156	158	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	32	36	anti-parallel
Strand 3	C	40	45	anti-parallel
Strand 4	C	207	212	anti-parallel
Strand 5	C	217	219	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	70	75	anti-parallel
Strand 3	C	129	136	anti-parallel
Strand 4	C	142	147	anti-parallel
Strand 5	C	153	155	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	37	42	anti-parallel
Strand 3	D	45	51	anti-parallel
Strand 4	D	215	221	anti-parallel
Strand 5	D	224	228	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	74	80	anti-parallel
Strand 3	D	139	147	anti-parallel
Strand 4	D	150	157	anti-parallel
Strand 5	D	161	164	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	44	49	anti-parallel
Strand 4	E	210	215	anti-parallel
Strand 5	E	222	224	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	67	first strand
Strand 2	E	70	76	anti-parallel
Strand 3	E	130	138	anti-parallel
Strand 4	E	141	147	anti-parallel
Strand 5	E	153	156	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	166	first strand
Strand 2	F	37	42	anti-parallel
Strand 3	F	45	53	anti-parallel
Strand 4	F	210	218	anti-parallel
Strand 5	F	224	227	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	74	80	anti-parallel
Strand 3	F	134	140	anti-parallel
Strand 4	F	148	152	anti-parallel
Strand 5	F	158	160	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	I	9	10	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	169	first strand
Strand 2	G	38	43	anti-parallel
Strand 3	G	47	53	anti-parallel
Strand 4	G	215	221	anti-parallel
Strand 5	G	228	229	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	73	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	136	143	anti-parallel
Strand 4	G	149	154	anti-parallel
Strand 5	G	160	163	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	N	38	39	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	57	first strand
Strand 2	I	48	51	anti-parallel
Strand 3	I	93	100	anti-parallel
Strand 4	I	121	126	anti-parallel
Strand 5	I	133	137	anti-parallel
Strand 6	I	70	75	parallel
Strand 7	I	163	171	parallel
Strand 8	I	230	237	parallel
Strand 9	I	188	193	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	212	213	first strand
Strand 2	J	55	56	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1	4	first strand
Strand 2	J	42	48	anti-parallel
Strand 3	J	75	80	anti-parallel
Strand 4	J	85	90	anti-parallel
Strand 5	J	16	20	parallel
Strand 6	J	117	125	parallel
Strand 7	J	201	208	parallel
Strand 8	J	139	143	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	42	first strand
Strand 2	K	84	91	anti-parallel
Strand 3	K	77	79	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	42	first strand
Strand 2	K	84	91	anti-parallel
Strand 3	K	139	146	anti-parallel
Strand 4	K	151	156	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	167	170	first strand
Strand 2	K	46	51	anti-parallel
Strand 3	K	54	60	anti-parallel
Strand 4	K	216	222	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	256	259	first strand
Strand 2	L	195	200	anti-parallel
Strand 3	L	184	190	anti-parallel
Strand 4	L	20	26	anti-parallel
Strand 5	L	10	15	anti-parallel
Strand 6	L	136	140	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	44	first strand
Strand 2	L	49	52	anti-parallel
Strand 3	L	108	112	anti-parallel
Strand 4	L	119	123	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	132	first strand
Strand 2	M	4	8	anti-parallel
Strand 3	M	13	18	anti-parallel
Strand 4	M	178	183	anti-parallel
Strand 5	M	188	190	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	26	27	first strand
Strand 2	N	184	188	anti-parallel
Strand 3	N	61	67	anti-parallel
Strand 4	N	70	75	anti-parallel
Strand 5	N	236	239	anti-parallel
Strand 6	N	242	245	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	39	first strand
Strand 2	M	42	48	anti-parallel
Strand 3	M	100	106	anti-parallel
Strand 4	M	114	118	anti-parallel
Strand 5	M	124	126	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	19	first strand
Strand 2	N	22	23	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	93	94	first strand
Strand 2	N	100	103	anti-parallel
Strand 3	N	157	164	anti-parallel
Strand 4	N	167	174	anti-parallel
Strand 5	N	179	181	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	163	165	first strand
Strand 2	O	40	44	anti-parallel
Strand 3	O	49	54	anti-parallel
Strand 4	O	220	227	anti-parallel
Strand 5	O	230	237	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	58	first strand
Strand 2	O	63	65	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	71	75	first strand
Strand 2	O	78	84	anti-parallel
Strand 3	O	134	141	anti-parallel
Strand 4	O	147	151	anti-parallel
Strand 5	O	159	161	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	181	184	first strand
Strand 2	P	56	60	anti-parallel
Strand 3	P	65	70	anti-parallel
Strand 4	P	232	237	anti-parallel
Strand 5	P	242	245	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	87	91	first strand
Strand 2	P	94	97	anti-parallel
Strand 3	P	155	161	anti-parallel
Strand 4	P	164	170	anti-parallel
Strand 5	P	176	178	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	159	163	first strand
Strand 2	Q	36	41	anti-parallel
Strand 3	Q	46	51	anti-parallel
Strand 4	Q	207	213	anti-parallel
Strand 5	Q	219	224	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	69	70	first strand
Strand 2	Q	75	81	anti-parallel
Strand 3	Q	130	138	anti-parallel
Strand 4	Q	142	148	anti-parallel
Strand 5	Q	155	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QYN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYN