Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QYQ entry

There are 5 chains in PDB entry 8QYQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	TYR 128
A	TRP 130	PHE 548
A	ALA 550	ARG 807
B	ASP 3	TYR 128
B	TRP 130	PHE 470

There are 79 helices in PDB entry 8QYQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	16	Right-handed 310
Helix 2	AA2	A	19	27	Right-handed alpha
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	89	93	Right-handed 310
Helix 5	AA5	A	97	110	Right-handed alpha
Helix 6	AA6	A	135	143	Right-handed alpha
Helix 7	AA7	A	153	169	Right-handed alpha
Helix 8	AA8	A	183	202	Right-handed alpha
Helix 9	AA9	A	215	231	Right-handed alpha
Helix 10	AB1	A	269	274	Right-handed 310
Helix 11	AB2	A	283	291	Right-handed alpha
Helix 12	AB3	A	294	302	Right-handed alpha
Helix 13	AB4	A	306	310	Right-handed 310
Helix 14	AB5	A	324	339	Right-handed alpha
Helix 15	AB6	A	342	360	Right-handed alpha
Helix 16	AB7	A	378	389	Right-handed alpha
Helix 17	AB8	A	391	401	Right-handed alpha
Helix 18	AB9	A	416	448	Right-handed alpha
Helix 19	AC1	A	472	504	Right-handed alpha
Helix 20	AC2	A	517	526	Right-handed alpha
Helix 21	AC3	A	529	538	Right-handed alpha
Helix 22	AC4	A	544	557	Right-handed alpha
Helix 23	AC5	A	592	599	Right-handed alpha
Helix 24	AC6	A	602	611	Right-handed alpha
Helix 25	AC7	A	614	622	Right-handed alpha
Helix 26	AC8	A	646	664	Right-handed alpha
Helix 27	AC9	A	685	697	Right-handed alpha
Helix 28	AD1	A	697	708	Right-handed alpha
Helix 29	AD2	A	715	723	Right-handed alpha
Helix 30	AD3	A	724	730	Right-handed 310
Helix 31	AD4	A	737	749	Right-handed alpha
Helix 32	AD5	A	768	807	Right-handed alpha
Helix 33	AD6	B	6	16	Right-handed 310
Helix 34	AD7	B	19	27	Right-handed alpha
Helix 35	AD8	B	74	76	Right-handed 310
Helix 36	AD9	B	81	85	Right-handed 310
Helix 37	AE1	B	89	93	Right-handed 310
Helix 38	AE2	B	97	110	Right-handed alpha
Helix 39	AE3	B	135	143	Right-handed alpha
Helix 40	AE4	B	153	169	Right-handed alpha
Helix 41	AE5	B	183	202	Right-handed alpha
Helix 42	AE6	B	215	231	Right-handed alpha
Helix 43	AE7	B	269	274	Right-handed 310
Helix 44	AE8	B	283	291	Right-handed alpha
Helix 45	AE9	B	294	302	Right-handed alpha
Helix 46	AF1	B	306	310	Right-handed 310
Helix 47	AF2	B	324	339	Right-handed alpha
Helix 48	AF3	B	342	360	Right-handed alpha
Helix 49	AF4	B	378	389	Right-handed alpha
Helix 50	AF5	B	391	401	Right-handed alpha
Helix 51	AF6	B	416	448	Right-handed alpha
Helix 52	AF7	B	472	504	Right-handed alpha
Helix 53	AF8	B	517	526	Right-handed alpha
Helix 54	AF9	B	529	538	Right-handed alpha
Helix 55	AG1	B	544	557	Right-handed alpha
Helix 56	AG2	B	592	599	Right-handed alpha
Helix 57	AG3	B	602	611	Right-handed alpha
Helix 58	AG4	B	614	622	Right-handed alpha
Helix 59	AG5	B	646	664	Right-handed alpha
Helix 60	AG6	B	685	697	Right-handed alpha
Helix 61	AG7	B	697	708	Right-handed alpha
Helix 62	AG8	B	715	723	Right-handed alpha
Helix 63	AG9	B	724	730	Right-handed 310
Helix 64	AH1	B	737	749	Right-handed alpha
Helix 65	AH2	B	768	798	Right-handed alpha
Helix 66	AH3	C	51	65	Right-handed alpha
Helix 67	AH4	C	79	87	Right-handed alpha
Helix 68	AH5	C	92	100	Right-handed alpha
Helix 69	AH6	C	104	109	Right-handed alpha
Helix 70	AH7	C	115	126	Right-handed alpha
Helix 71	AH8	C	133	143	Right-handed alpha
Helix 72	AH9	C	154	164	Right-handed alpha
Helix 73	AI1	C	169	177	Right-handed alpha
Helix 74	AI2	C	189	198	Right-handed alpha
Helix 75	AI3	D	81	87	Right-handed alpha
Helix 76	AI4	D	92	100	Right-handed alpha
Helix 77	AI5	D	133	143	Right-handed alpha
Helix 78	AI6	D	154	164	Right-handed alpha
Helix 79	AI7	D	189	198	Right-handed alpha

There are 17 sheets in PDB entry 8QYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	71	first strand
Strand 2	A	59	63	anti-parallel
Strand 3	A	45	54	anti-parallel
Strand 4	A	36	41	anti-parallel
Strand 5	A	77	78	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	121	125	anti-parallel
Strand 3	A	666	673	parallel
Strand 4	A	172	177	parallel
Strand 5	A	455	461	parallel
Strand 6	A	245	252	anti-parallel
Strand 7	A	258	266	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	241	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	373	375	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	405	first strand
Strand 2	A	410	412	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	584	588	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	714	first strand
Strand 2	A	762	765	anti-parallel
Strand 3	A	756	758	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	58	63	anti-parallel
Strand 3	B	46	54	anti-parallel
Strand 4	B	36	40	anti-parallel
Strand 5	B	77	78	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	666	673	parallel
Strand 4	B	172	177	parallel
Strand 5	B	455	461	parallel
Strand 6	B	245	252	anti-parallel
Strand 7	B	258	266	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	241	242	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	373	375	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	406	first strand
Strand 2	B	409	412	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	584	588	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	714	first strand
Strand 2	B	762	765	anti-parallel
Strand 3	B	756	758	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	112	114	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	186	188	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	153	first strand
Strand 2	D	186	188	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QYQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYQ