Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QYY entry

There are 7 chains in PDB entry 8QYY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 245
B	MET 1	HIS 245
C	MET 1	HIS 245
D	MET 1	HIS 245
E	MET 1	HIS 245
F	MET 1	LEU 246
G	MET 1	LEU 246

There are 80 helices in PDB entry 8QYY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	13	Right-handed alpha
Helix 2	AA2	A	17	38	Right-handed alpha
Helix 3	AA3	A	38	58	Right-handed alpha
Helix 4	AA4	A	63	75	Right-handed alpha
Helix 5	AA5	A	77	91	Right-handed alpha
Helix 6	AA6	A	112	116	Right-handed 310
Helix 7	AA7	A	118	123	Right-handed alpha
Helix 8	AA8	A	128	133	Right-handed alpha
Helix 9	AA9	A	134	158	Right-handed alpha
Helix 10	AB1	A	162	164	Right-handed 310
Helix 11	AB2	A	165	218	Right-handed alpha
Helix 12	AB3	A	223	245	Right-handed alpha
Helix 13	AB4	B	2	12	Right-handed alpha
Helix 14	AB5	B	13	14	Right-handed 310
Helix 15	AB6	B	15	16	Right-handed 310
Helix 16	AB7	B	17	38	Right-handed alpha
Helix 17	AB8	B	38	57	Right-handed alpha
Helix 18	AB9	B	63	75	Right-handed alpha
Helix 19	AC1	B	77	90	Right-handed alpha
Helix 20	AC2	B	112	116	Right-handed 310
Helix 21	AC3	B	118	123	Right-handed alpha
Helix 22	AC4	B	128	133	Right-handed alpha
Helix 23	AC5	B	134	158	Right-handed alpha
Helix 24	AC6	B	162	164	Right-handed 310
Helix 25	AC7	B	165	220	Right-handed alpha
Helix 26	AC8	B	223	245	Right-handed alpha
Helix 27	AC9	C	2	13	Right-handed alpha
Helix 28	AD1	C	17	38	Right-handed alpha
Helix 29	AD2	C	38	59	Right-handed alpha
Helix 30	AD3	C	63	75	Right-handed alpha
Helix 31	AD4	C	77	90	Right-handed alpha
Helix 32	AD5	C	112	116	Right-handed 310
Helix 33	AD6	C	118	123	Right-handed alpha
Helix 34	AD7	C	123	128	Right-handed alpha
Helix 35	AD8	C	128	133	Right-handed alpha
Helix 36	AD9	C	134	157	Right-handed alpha
Helix 37	AE1	C	162	218	Right-handed alpha
Helix 38	AE2	C	223	245	Right-handed alpha
Helix 39	AE3	D	2	13	Right-handed alpha
Helix 40	AE4	D	17	38	Right-handed alpha
Helix 41	AE5	D	38	58	Right-handed alpha
Helix 42	AE6	D	63	77	Right-handed alpha
Helix 43	AE7	D	80	90	Right-handed alpha
Helix 44	AE8	D	112	116	Right-handed 310
Helix 45	AE9	D	118	123	Right-handed alpha
Helix 46	AF1	D	123	128	Right-handed alpha
Helix 47	AF2	D	128	133	Right-handed alpha
Helix 48	AF3	D	134	158	Right-handed alpha
Helix 49	AF4	D	162	164	Right-handed 310
Helix 50	AF5	D	165	218	Right-handed alpha
Helix 51	AF6	D	223	245	Right-handed alpha
Helix 52	AF7	E	2	12	Right-handed alpha
Helix 53	AF8	E	13	14	Right-handed 310
Helix 54	AF9	E	15	16	Right-handed 310
Helix 55	AG1	E	17	38	Right-handed alpha
Helix 56	AG2	E	38	58	Right-handed alpha
Helix 57	AG3	E	63	75	Right-handed alpha
Helix 58	AG4	E	77	91	Right-handed alpha
Helix 59	AG5	E	112	116	Right-handed 310
Helix 60	AG6	E	118	123	Right-handed alpha
Helix 61	AG7	E	123	128	Right-handed alpha
Helix 62	AG8	E	128	133	Right-handed alpha
Helix 63	AG9	E	134	157	Right-handed alpha
Helix 64	AH1	E	162	218	Right-handed alpha
Helix 65	AH2	E	223	245	Right-handed alpha
Helix 66	AH3	F	19	79	Right-handed alpha
Helix 67	AH4	F	107	127	Right-handed alpha
Helix 68	AH5	F	127	133	Right-handed alpha
Helix 69	AH6	F	148	169	Right-handed alpha
Helix 70	AH7	F	172	178	Right-handed alpha
Helix 71	AH8	F	179	189	Right-handed alpha
Helix 72	AH9	F	203	208	Right-handed alpha
Helix 73	AI1	G	18	47	Right-handed alpha
Helix 74	AI2	G	47	79	Right-handed alpha
Helix 75	AI3	G	107	127	Right-handed alpha
Helix 76	AI4	G	127	133	Right-handed alpha
Helix 77	AI5	G	148	168	Right-handed alpha
Helix 78	AI6	G	172	177	Right-handed alpha
Helix 79	AI7	G	179	189	Right-handed alpha
Helix 80	AI8	G	224	228	Right-handed 310

There are 7 sheets in PDB entry 8QYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	98	first strand
Strand 2	A	101	108	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	98	first strand
Strand 2	B	101	109	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	97	first strand
Strand 2	C	102	109	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	98	first strand
Strand 2	D	101	109	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	98	first strand
Strand 2	E	101	108	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	85	first strand
Strand 2	F	90	93	anti-parallel
Strand 3	F	210	216	anti-parallel
Strand 4	F	134	142	anti-parallel
Strand 5	F	190	196	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	85	first strand
Strand 2	G	90	92	anti-parallel
Strand 3	G	211	216	anti-parallel
Strand 4	G	134	140	anti-parallel
Strand 5	G	190	191	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QYY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYY