Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QYZ entry

There are 3 chains in PDB entry 8QYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 10	SER 181
C	GLY 3	LYS 1055
B	VAL 10	ASN 57

There are267 helices in PDB entry 8QYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	34	Right-handed alpha
Helix 2	AA2	A	71	75	Right-handed 310
Helix 3	AA3	A	77	83	Right-handed 310
Helix 4	AA4	A	96	102	Right-handed alpha
Helix 5	AA5	A	102	112	Right-handed alpha
Helix 6	AA6	A	134	138	Right-handed 310
Helix 7	AA7	A	160	172	Right-handed alpha
Helix 8	AA8	C	12	26	Right-handed alpha
Helix 9	AA9	C	27	43	Right-handed alpha
Helix 10	AB1	C	47	58	Right-handed alpha
Helix 11	AB2	C	60	79	Right-handed alpha
Helix 12	AB3	C	80	82	Right-handed 310
Helix 13	AB4	C	83	104	Right-handed alpha
Helix 14	AB5	C	104	111	Right-handed alpha
Helix 15	AB6	C	111	130	Right-handed alpha
Helix 16	AB7	C	136	145	Right-handed alpha
Helix 17	AB8	C	148	168	Right-handed alpha
Helix 18	AB9	C	175	189	Right-handed alpha
Helix 19	AC1	C	189	204	Right-handed alpha
Helix 20	AC2	C	207	221	Right-handed alpha
Helix 21	AC3	C	226	231	Right-handed alpha
Helix 22	AC4	C	233	245	Right-handed alpha
Helix 23	AC5	C	248	260	Right-handed alpha
Helix 24	AC6	C	268	290	Right-handed alpha
Helix 25	AC7	C	296	303	Right-handed alpha
Helix 26	AC8	C	306	333	Right-handed alpha
Helix 27	AC9	C	336	352	Right-handed alpha
Helix 28	AD1	C	355	376	Right-handed alpha
Helix 29	AD2	C	416	419	Right-handed 310
Helix 30	AD3	C	420	434	Right-handed alpha
Helix 31	AD4	C	459	479	Right-handed alpha
Helix 32	AD5	C	479	496	Right-handed alpha
Helix 33	AD6	C	501	515	Right-handed alpha
Helix 34	AD7	C	520	542	Right-handed alpha
Helix 35	AD8	C	544	562	Right-handed alpha
Helix 36	AD9	C	562	569	Right-handed alpha
Helix 37	AE1	C	569	584	Right-handed alpha
Helix 38	AE2	C	590	607	Right-handed alpha
Helix 39	AE3	C	607	612	Right-handed alpha
Helix 40	AE4	C	620	628	Right-handed alpha
Helix 41	AE5	C	628	633	Right-handed alpha
Helix 42	AE6	C	637	653	Right-handed alpha
Helix 43	AE7	C	657	686	Right-handed alpha
Helix 44	AE8	C	687	691	Right-handed 310
Helix 45	AE9	C	692	714	Right-handed alpha
Helix 46	AF1	C	717	747	Right-handed alpha
Helix 47	AF2	C	748	752	Right-handed 310
Helix 48	AF3	C	753	777	Right-handed alpha
Helix 49	AF4	C	779	787	Right-handed alpha
Helix 50	AF5	C	787	802	Right-handed alpha
Helix 51	AF6	C	803	807	Right-handed 310
Helix 52	AF7	C	808	823	Right-handed alpha
Helix 53	AF8	C	826	846	Right-handed alpha
Helix 54	AF9	C	852	870	Right-handed alpha
Helix 55	AG1	C	871	877	Right-handed alpha
Helix 56	AG2	C	878	894	Right-handed alpha
Helix 57	AG3	C	897	918	Right-handed alpha
Helix 58	AG4	C	921	945	Right-handed alpha
Helix 59	AG5	C	948	950	Right-handed 310
Helix 60	AG6	C	951	968	Right-handed alpha
Helix 61	AG7	C	986	1003	Right-handed alpha
Helix 62	AG8	C	1007	1021	Right-handed alpha
Helix 63	AG9	C	1024	1039	Right-handed alpha
Helix 64	AH1	C	1045	1049	Right-handed 310
Helix 65	AH2	C	1050	1055	Right-handed alpha
Helix 66	AH3	B	24	34	Right-handed alpha
Helix 67	AH4	B	71	75	Right-handed 310
Helix 68	AH5	B	77	83	Right-handed 310
Helix 69	AH6	B	96	102	Right-handed alpha
Helix 70	AH7	B	102	112	Right-handed alpha
Helix 71	AH8	B	134	138	Right-handed 310
Helix 72	AH9	B	160	172	Right-handed alpha
Helix 73	AI1	D	12	26	Right-handed alpha
Helix 74	AI2	D	27	43	Right-handed alpha
Helix 75	AI3	D	46	49	Right-handed 310
Helix 76	AI4	D	50	58	Right-handed alpha
Helix 77	AI5	D	60	78	Right-handed alpha
Helix 78	AI6	D	79	82	Right-handed 310
Helix 79	AI7	D	83	104	Right-handed alpha
Helix 80	AI8	D	104	111	Right-handed alpha
Helix 81	AI9	D	111	130	Right-handed alpha
Helix 82	AJ1	D	136	145	Right-handed alpha
Helix 83	AJ2	D	148	168	Right-handed alpha
Helix 84	AJ3	D	175	189	Right-handed alpha
Helix 85	AJ4	D	189	204	Right-handed alpha
Helix 86	AJ5	D	207	221	Right-handed alpha
Helix 87	AJ6	D	226	231	Right-handed alpha
Helix 88	AJ7	D	233	240	Right-handed alpha
Helix 89	AJ8	D	240	245	Right-handed alpha
Helix 90	AJ9	D	248	260	Right-handed alpha
Helix 91	AK1	D	268	290	Right-handed alpha
Helix 92	AK2	D	296	303	Right-handed alpha
Helix 93	AK3	D	306	333	Right-handed alpha
Helix 94	AK4	D	336	352	Right-handed alpha
Helix 95	AK5	D	355	376	Right-handed alpha
Helix 96	AK6	D	416	419	Right-handed 310
Helix 97	AK7	D	420	434	Right-handed alpha
Helix 98	AK8	D	459	479	Right-handed alpha
Helix 99	AK9	D	479	496	Right-handed alpha
Helix 100	AL1	D	501	515	Right-handed alpha
Helix 101	AL2	D	520	542	Right-handed alpha
Helix 102	AL3	D	544	562	Right-handed alpha
Helix 103	AL4	D	562	569	Right-handed alpha
Helix 104	AL5	D	569	584	Right-handed alpha
Helix 105	AL6	D	590	607	Right-handed alpha
Helix 106	AL7	D	607	612	Right-handed alpha
Helix 107	AL8	D	620	628	Right-handed alpha
Helix 108	AL9	D	628	633	Right-handed alpha
Helix 109	AM1	D	637	653	Right-handed alpha
Helix 110	AM2	D	657	686	Right-handed alpha
Helix 111	AM3	D	687	691	Right-handed 310
Helix 112	AM4	D	692	714	Right-handed alpha
Helix 113	AM5	D	717	724	Right-handed alpha
Helix 114	AM6	D	724	747	Right-handed alpha
Helix 115	AM7	D	748	752	Right-handed 310
Helix 116	AM8	D	753	777	Right-handed alpha
Helix 117	AM9	D	779	787	Right-handed alpha
Helix 118	AN1	D	787	802	Right-handed alpha
Helix 119	AN2	D	803	807	Right-handed 310
Helix 120	AN3	D	808	823	Right-handed alpha
Helix 121	AN4	D	826	846	Right-handed alpha
Helix 122	AN5	D	852	870	Right-handed alpha
Helix 123	AN6	D	871	877	Right-handed alpha
Helix 124	AN7	D	878	894	Right-handed alpha
Helix 125	AN8	D	897	918	Right-handed alpha
Helix 126	AN9	D	921	945	Right-handed alpha
Helix 127	AO1	D	948	950	Right-handed 310
Helix 128	AO2	D	951	968	Right-handed alpha
Helix 129	AO3	D	986	1003	Right-handed alpha
Helix 130	AO4	D	1007	1021	Right-handed alpha
Helix 131	AO5	D	1024	1039	Right-handed alpha
Helix 132	AO6	D	1045	1049	Right-handed 310
Helix 133	AO7	D	1050	1055	Right-handed alpha
Helix 134	AO8	E	24	34	Right-handed alpha
Helix 135	AO9	E	71	75	Right-handed 310
Helix 136	AP1	E	77	83	Right-handed 310
Helix 137	AP2	E	96	102	Right-handed alpha
Helix 138	AP3	E	102	112	Right-handed alpha
Helix 139	AP4	E	134	138	Right-handed 310
Helix 140	AP5	E	160	172	Right-handed alpha
Helix 141	AP6	F	13	26	Right-handed alpha
Helix 142	AP7	F	28	43	Right-handed alpha
Helix 143	AP8	F	47	58	Right-handed alpha
Helix 144	AP9	F	60	78	Right-handed alpha
Helix 145	AQ1	F	79	82	Right-handed 310
Helix 146	AQ2	F	83	104	Right-handed alpha
Helix 147	AQ3	F	104	111	Right-handed alpha
Helix 148	AQ4	F	111	130	Right-handed alpha
Helix 149	AQ5	F	136	148	Right-handed alpha
Helix 150	AQ6	F	148	168	Right-handed alpha
Helix 151	AQ7	F	175	189	Right-handed alpha
Helix 152	AQ8	F	189	204	Right-handed alpha
Helix 153	AQ9	F	206	221	Right-handed alpha
Helix 154	AR1	F	226	231	Right-handed alpha
Helix 155	AR2	F	233	240	Right-handed alpha
Helix 156	AR3	F	240	245	Right-handed alpha
Helix 157	AR4	F	248	260	Right-handed alpha
Helix 158	AR5	F	268	290	Right-handed alpha
Helix 159	AR6	F	296	304	Right-handed alpha
Helix 160	AR7	F	306	333	Right-handed alpha
Helix 161	AR8	F	336	352	Right-handed alpha
Helix 162	AR9	F	355	376	Right-handed alpha
Helix 163	AS1	F	416	419	Right-handed 310
Helix 164	AS2	F	420	434	Right-handed alpha
Helix 165	AS3	F	459	479	Right-handed alpha
Helix 166	AS4	F	479	496	Right-handed alpha
Helix 167	AS5	F	501	515	Right-handed alpha
Helix 168	AS6	F	520	542	Right-handed alpha
Helix 169	AS7	F	544	562	Right-handed alpha
Helix 170	AS8	F	562	569	Right-handed alpha
Helix 171	AS9	F	569	584	Right-handed alpha
Helix 172	AT1	F	590	607	Right-handed alpha
Helix 173	AT2	F	607	612	Right-handed alpha
Helix 174	AT3	F	620	628	Right-handed alpha
Helix 175	AT4	F	628	633	Right-handed alpha
Helix 176	AT5	F	637	653	Right-handed alpha
Helix 177	AT6	F	657	686	Right-handed alpha
Helix 178	AT7	F	687	691	Right-handed 310
Helix 179	AT8	F	692	714	Right-handed alpha
Helix 180	AT9	F	717	747	Right-handed alpha
Helix 181	AU1	F	748	752	Right-handed 310
Helix 182	AU2	F	753	777	Right-handed alpha
Helix 183	AU3	F	779	787	Right-handed alpha
Helix 184	AU4	F	787	802	Right-handed alpha
Helix 185	AU5	F	803	807	Right-handed 310
Helix 186	AU6	F	808	823	Right-handed alpha
Helix 187	AU7	F	826	846	Right-handed alpha
Helix 188	AU8	F	852	870	Right-handed alpha
Helix 189	AU9	F	871	877	Right-handed alpha
Helix 190	AV1	F	878	894	Right-handed alpha
Helix 191	AV2	F	897	918	Right-handed alpha
Helix 192	AV3	F	921	945	Right-handed alpha
Helix 193	AV4	F	948	950	Right-handed 310
Helix 194	AV5	F	951	968	Right-handed alpha
Helix 195	AV6	F	986	1003	Right-handed alpha
Helix 196	AV7	F	1007	1021	Right-handed alpha
Helix 197	AV8	F	1024	1039	Right-handed alpha
Helix 198	AV9	F	1045	1051	Right-handed 310
Helix 199	AW1	F	1052	1056	Right-handed 310
Helix 200	AW2	G	24	34	Right-handed alpha
Helix 201	AW3	G	71	75	Right-handed 310
Helix 202	AW4	G	77	83	Right-handed 310
Helix 203	AW5	G	96	102	Right-handed alpha
Helix 204	AW6	G	102	112	Right-handed alpha
Helix 205	AW7	G	134	138	Right-handed 310
Helix 206	AW8	G	160	172	Right-handed alpha
Helix 207	AW9	H	13	26	Right-handed alpha
Helix 208	AX1	H	28	43	Right-handed alpha
Helix 209	AX2	H	47	58	Right-handed alpha
Helix 210	AX3	H	60	79	Right-handed alpha
Helix 211	AX4	H	80	82	Right-handed 310
Helix 212	AX5	H	83	104	Right-handed alpha
Helix 213	AX6	H	104	111	Right-handed alpha
Helix 214	AX7	H	111	130	Right-handed alpha
Helix 215	AX8	H	136	148	Right-handed alpha
Helix 216	AX9	H	148	168	Right-handed alpha
Helix 217	AY1	H	175	189	Right-handed alpha
Helix 218	AY2	H	189	204	Right-handed alpha
Helix 219	AY3	H	206	221	Right-handed alpha
Helix 220	AY4	H	226	231	Right-handed alpha
Helix 221	AY5	H	233	245	Right-handed alpha
Helix 222	AY6	H	248	260	Right-handed alpha
Helix 223	AY7	H	268	290	Right-handed alpha
Helix 224	AY8	H	296	304	Right-handed alpha
Helix 225	AY9	H	306	333	Right-handed alpha
Helix 226	AZ1	H	336	352	Right-handed alpha
Helix 227	AZ2	H	355	376	Right-handed alpha
Helix 228	AZ3	H	416	419	Right-handed 310
Helix 229	AZ4	H	420	434	Right-handed alpha
Helix 230	AZ5	H	459	479	Right-handed alpha
Helix 231	AZ6	H	479	496	Right-handed alpha
Helix 232	AZ7	H	501	515	Right-handed alpha
Helix 233	AZ8	H	520	542	Right-handed alpha
Helix 234	AZ9	H	544	562	Right-handed alpha
Helix 235	BA1	H	562	569	Right-handed alpha
Helix 236	BA2	H	569	584	Right-handed alpha
Helix 237	BA3	H	590	607	Right-handed alpha
Helix 238	BA4	H	607	612	Right-handed alpha
Helix 239	BA5	H	620	628	Right-handed alpha
Helix 240	BA6	H	628	633	Right-handed alpha
Helix 241	BA7	H	637	653	Right-handed alpha
Helix 242	BA8	H	657	686	Right-handed alpha
Helix 243	BA9	H	687	691	Right-handed 310
Helix 244	BB1	H	692	714	Right-handed alpha
Helix 245	BB2	H	717	747	Right-handed alpha
Helix 246	BB3	H	748	752	Right-handed 310
Helix 247	BB4	H	753	777	Right-handed alpha
Helix 248	BB5	H	779	787	Right-handed alpha
Helix 249	BB6	H	787	802	Right-handed alpha
Helix 250	BB7	H	803	807	Right-handed 310
Helix 251	BB8	H	808	823	Right-handed alpha
Helix 252	BB9	H	826	846	Right-handed alpha
Helix 253	BC1	H	852	870	Right-handed alpha
Helix 254	BC2	H	871	877	Right-handed alpha
Helix 255	BC3	H	878	894	Right-handed alpha
Helix 256	BC4	H	897	918	Right-handed alpha
Helix 257	BC5	H	921	945	Right-handed alpha
Helix 258	BC6	H	948	950	Right-handed 310
Helix 259	BC7	H	951	968	Right-handed alpha
Helix 260	BC8	H	986	1003	Right-handed alpha
Helix 261	BC9	H	1007	1021	Right-handed alpha
Helix 262	BD1	H	1024	1039	Right-handed alpha
Helix 263	BD2	H	1045	1051	Right-handed 310
Helix 264	BD3	I	1	11	Right-handed alpha
Helix 265	BD4	J	1	11	Right-handed alpha
Helix 266	BD5	K	1	11	Right-handed alpha
Helix 267	BD6	L	1	11	Right-handed alpha

There are 8 sheets in PDB entry 8QYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	119	124	parallel
Strand 3	A	87	93	parallel
Strand 4	A	12	19	parallel
Strand 5	A	59	68	parallel
Strand 6	A	47	56	anti-parallel
Strand 7	A	178	179	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	445	first strand
Strand 2	C	451	455	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	119	124	parallel
Strand 3	B	87	93	parallel
Strand 4	B	12	19	parallel
Strand 5	B	59	68	parallel
Strand 6	B	47	56	anti-parallel
Strand 7	B	178	179	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	445	first strand
Strand 2	D	451	456	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	56	first strand
Strand 2	E	59	68	anti-parallel
Strand 3	E	12	19	parallel
Strand 4	E	87	93	parallel
Strand 5	E	119	124	parallel
Strand 6	E	147	150	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	440	445	first strand
Strand 2	F	451	456	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	56	first strand
Strand 2	G	59	68	anti-parallel
Strand 3	G	12	19	parallel
Strand 4	G	87	93	parallel
Strand 5	G	119	124	parallel
Strand 6	G	147	150	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	440	445	first strand
Strand 2	H	451	456	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QYZ