Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QZ1 entry

There are 4 chains in PDB entry 8QZ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 73VAL 338
B
 LYS 73LEU 330
C
 GLN 1HIS 129
D
 GLN 3SER 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8QZ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 121Right-handed alpha
Helix 2
AA2
A
125 143Right-handed alpha
Helix 3
AA3
A
158 171Right-handed alpha
Helix 4
AA4
A
182 217Right-handed alpha
Helix 5
AA5
A
233 252Right-handed alpha
Helix 6
AA6
A
253 264Right-handed alpha
Helix 7
AA7
A
267 280Right-handed alpha
Helix 8
AA8
A
300 338Right-handed alpha
Helix 9
AA9
B
74 121Right-handed alpha
Helix 10
AB1
B
125 143Right-handed alpha
Helix 11
AB2
B
158 171Right-handed alpha
Helix 12
AB3
B
182 221Right-handed alpha
Helix 13
AB4
B
238 252Right-handed alpha
Helix 14
AB5
B
253 264Right-handed alpha
Helix 15
AB6
B
267 280Right-handed alpha
Helix 16
AB7
B
300 330Right-handed alpha
Helix 17
AB8
C
62 65Right-handed 310
Helix 18
AB9
C
87 91Right-handed 310
Helix 19
AC1
D
87 91Right-handed 310
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There are 3 sheets in PDB entry 8QZ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
70 73anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
120 125parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
57 60anti-parallel
Strand 7
D
57 60anti-parallel
Strand 8
D
45 51anti-parallel
Strand 9
D
34 39anti-parallel
Strand 10
D
92 98anti-parallel
Strand 11
D
120 124anti-parallel
Strand 12
D
10 12parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
17 24anti-parallel
Strand 3
D
78 84anti-parallel
Strand 4
D
70 73anti-parallel
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