Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QZ2 entry

There are 3 chains in PDB entry 8QZ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 74ILE 323
B
 LYS 75GLY 324
C
 VAL 2VAL 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8QZ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 121Right-handed alpha
Helix 2
AA2
A
125 143Right-handed alpha
Helix 3
AA3
A
158 171Right-handed alpha
Helix 4
AA4
A
182 225Right-handed alpha
Helix 5
AA5
A
238 252Right-handed alpha
Helix 6
AA6
A
253 264Right-handed alpha
Helix 7
AA7
A
267 280Right-handed alpha
Helix 8
AA8
A
301 323Right-handed alpha
Helix 9
AA9
B
76 121Right-handed alpha
Helix 10
AB1
B
125 143Right-handed alpha
Helix 11
AB2
B
158 171Right-handed alpha
Helix 12
AB3
B
182 226Right-handed alpha
Helix 13
AB4
B
234 252Right-handed alpha
Helix 14
AB5
B
253 264Right-handed alpha
Helix 15
AB6
B
267 280Right-handed alpha
Helix 16
AB7
B
300 324Right-handed alpha
Helix 17
AB8
C
28 32Right-handed 310
Helix 18
AB9
C
73 75Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 8QZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
16 25anti-parallel
Strand 3
C
77 85anti-parallel
Strand 4
C
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
91 98anti-parallel
Strand 5
C
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
91 98anti-parallel
Strand 5
C
118 120anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il