Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QZ3 entry

There are 5 chains in PDB entry 8QZ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 74LYS 333
B
 MET 74GLY 339
C
 GLN 1SER 127
D
 GLN 1SER 127
E
 GLN 1SER 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8QZ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 106Right-handed alpha
Helix 2
AA2
A
109 121Right-handed alpha
Helix 3
AA3
A
125 139Right-handed alpha
Helix 4
AA4
A
158 171Right-handed alpha
Helix 5
AA5
A
182 229Right-handed alpha
Helix 6
AA6
A
232 253Right-handed alpha
Helix 7
AA7
A
253 265Right-handed alpha
Helix 8
AA8
A
267 280Right-handed alpha
Helix 9
AA9
A
300 333Right-handed alpha
Helix 10
AB1
B
75 121Right-handed alpha
Helix 11
AB2
B
125 142Right-handed alpha
Helix 12
AB3
B
158 171Right-handed alpha
Helix 13
AB4
B
182 226Right-handed alpha
Helix 14
AB5
B
233 253Right-handed alpha
Helix 15
AB6
B
253 265Right-handed alpha
Helix 16
AB7
B
267 280Right-handed alpha
Helix 17
AB8
B
300 339Right-handed alpha
Helix 18
AB9
C
28 32Right-handed 310
Helix 19
AC1
C
74 76Right-handed 310
Helix 20
AC2
C
87 91Right-handed 310
Helix 21
AC3
C
104 108Right-handed 310
Helix 22
AC4
C
110 114Right-handed 310
Helix 23
AC5
D
28 32Right-handed 310
Helix 24
AC6
D
74 76Right-handed 310
Helix 25
AC7
D
87 91Right-handed 310
Helix 26
AC8
D
110 114Right-handed 310
Helix 27
AC9
E
28 32Right-handed 310
Helix 28
AD1
E
74 76Right-handed 310
Helix 29
AD2
E
87 91Right-handed 310
Helix 30
AD3
E
104 108Right-handed 310
Helix 31
AD4
E
110 114Right-handed 310
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There are 9 sheets in PDB entry 8QZ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
121 126parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
121 126parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
116 117anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
18 24anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
121 126parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
121 126parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
116 117anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
18 24anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 13first strand
Strand 2
E
121 126parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
46 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 13first strand
Strand 2
E
121 126parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
116 117anti-parallel
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