Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QZ4 entry

There are 4 chains in PDB entry 8QZ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 71GLU 337
B
 TRP 74GLU 337
C
 GLN 1SER 112
D
 GLN 1SER 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8QZ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 121Right-handed alpha
Helix 2
AA2
A
125 142Right-handed alpha
Helix 3
AA3
A
158 171Right-handed alpha
Helix 4
AA4
A
182 223Right-handed alpha
Helix 5
AA5
A
238 253Right-handed alpha
Helix 6
AA6
A
253 265Right-handed alpha
Helix 7
AA7
A
267 280Right-handed alpha
Helix 8
AA8
A
300 337Right-handed alpha
Helix 9
AA9
B
75 121Right-handed alpha
Helix 10
AB1
B
125 142Right-handed alpha
Helix 11
AB2
B
158 171Right-handed alpha
Helix 12
AB3
B
182 229Right-handed alpha
Helix 13
AB4
B
232 253Right-handed alpha
Helix 14
AB5
B
253 265Right-handed alpha
Helix 15
AB6
B
267 280Right-handed alpha
Helix 16
AB7
B
300 337Right-handed alpha
Helix 17
AB8
C
86 90Right-handed 310
Helix 18
AB9
D
86 90Right-handed 310
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There are 6 sheets in PDB entry 8QZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
107 111parallel
Strand 3
C
91 97anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
107 111parallel
Strand 3
C
91 97anti-parallel
Strand 4
C
102 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
67 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 111parallel
Strand 3
D
91 97anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
57 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 111parallel
Strand 3
D
91 97anti-parallel
Strand 4
D
102 103anti-parallel
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