Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QZ6 entry

There are 4 chains in PDB entry 8QZ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 330
B
 GLN 1VAL 124
D
 GLN 1VAL 124
C
 ALA 2VAL 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8QZ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed alpha
Helix 2
AA2
A
20 25Right-handed 310
Helix 3
AA3
A
34 39Right-handed 310
Helix 4
AA4
A
40 59Right-handed alpha
Helix 5
AA5
A
59 67Right-handed alpha
Helix 6
AA6
A
80 90Right-handed alpha
Helix 7
AA7
A
95 107Right-handed alpha
Helix 8
AA8
A
109 125Right-handed alpha
Helix 9
AA9
A
127 154Right-handed alpha
Helix 10
AB1
A
161 166Right-handed 310
Helix 11
AB2
A
175 198Right-handed alpha
Helix 12
AB3
A
206 224Right-handed alpha
Helix 13
AB4
A
227 239Right-handed alpha
Helix 14
AB5
A
241 254Right-handed alpha
Helix 15
AB6
A
256 277Right-handed alpha
Helix 16
AB7
A
278 289Right-handed alpha
Helix 17
AB8
A
289 295Right-handed alpha
Helix 18
AB9
A
298 330Right-handed alpha
Helix 19
AC1
B
28 32Right-handed 310
Helix 20
AC2
B
87 91Right-handed 310
Helix 21
AC3
B
109 113Right-handed 310
Helix 22
AC4
D
28 32Right-handed 310
Helix 23
AC5
D
87 91Right-handed 310
Helix 24
AC6
D
109 113Right-handed 310
Helix 25
AC7
C
3 9Right-handed alpha
Helix 26
AC8
C
20 25Right-handed 310
Helix 27
AC9
C
34 39Right-handed 310
Helix 28
AD1
C
40 59Right-handed alpha
Helix 29
AD2
C
59 67Right-handed alpha
Helix 30
AD3
C
80 90Right-handed alpha
Helix 31
AD4
C
95 107Right-handed alpha
Helix 32
AD5
C
109 125Right-handed alpha
Helix 33
AD6
C
127 154Right-handed alpha
Helix 34
AD7
C
161 166Right-handed 310
Helix 35
AD8
C
175 198Right-handed alpha
Helix 36
AD9
C
206 224Right-handed alpha
Helix 37
AE1
C
227 239Right-handed alpha
Helix 38
AE2
C
241 254Right-handed alpha
Helix 39
AE3
C
256 277Right-handed alpha
Helix 40
AE4
C
278 289Right-handed alpha
Helix 41
AE5
C
289 295Right-handed alpha
Helix 42
AE6
C
298 330Right-handed alpha
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There are 4 sheets in PDB entry 8QZ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
120 123parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
18 24anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 11first strand
Strand 2
D
120 123parallel
Strand 3
D
92 98anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
58 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il