Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QZ9 entry

There are 15 chains in PDB entry 8QZ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 5	ILE 233
B	ARG 3	GLU 248
C	SER 2	LYS 236
D	MET 1	ASP 240
E	MET 1	ARG 239
F	GLY 5	LEU 244
G	MET 1	GLU 244
H	ASP 29	LEU 141
I	ALA 2	THR 288
J	MET 1	PHE 264
K	ALA 3	UNK 262
L	TYR 6	ARG 203
M	MET 1	PHE 196
N	ALA 2	SER 247
O	THR 39	VAL 236

There are102 helices in PDB entry 8QZ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	30	Right-handed alpha
Helix 2	AA2	A	80	102	Right-handed alpha
Helix 3	AA3	A	106	120	Right-handed alpha
Helix 4	AA4	A	121	123	Right-handed 310
Helix 5	AA5	A	167	177	Right-handed alpha
Helix 6	AA6	A	183	198	Right-handed alpha
Helix 7	AA7	A	222	232	Right-handed alpha
Helix 8	AA8	B	18	27	Right-handed alpha
Helix 9	AA9	B	28	31	Right-handed 310
Helix 10	AB1	B	79	102	Right-handed alpha
Helix 11	AB2	B	106	121	Right-handed alpha
Helix 12	AB3	B	167	179	Right-handed alpha
Helix 13	AB4	B	185	201	Right-handed alpha
Helix 14	AB5	B	229	247	Right-handed alpha
Helix 15	AB6	C	16	28	Right-handed alpha
Helix 16	AB7	C	55	59	Right-handed 310
Helix 17	AB8	C	76	99	Right-handed alpha
Helix 18	AB9	C	103	118	Right-handed alpha
Helix 19	AC1	C	164	176	Right-handed alpha
Helix 20	AC2	C	183	197	Right-handed alpha
Helix 21	AC3	C	221	235	Right-handed alpha
Helix 22	AC4	D	21	30	Right-handed alpha
Helix 23	AC5	D	31	34	Right-handed 310
Helix 24	AC6	D	81	104	Right-handed alpha
Helix 25	AC7	D	108	121	Right-handed alpha
Helix 26	AC8	D	173	185	Right-handed alpha
Helix 27	AC9	D	192	206	Right-handed alpha
Helix 28	AD1	D	230	240	Right-handed alpha
Helix 29	AD2	E	3	7	Right-handed 310
Helix 30	AD3	E	19	27	Right-handed alpha
Helix 31	AD4	E	28	32	Right-handed 310
Helix 32	AD5	E	78	100	Right-handed alpha
Helix 33	AD6	E	104	118	Right-handed alpha
Helix 34	AD7	E	119	121	Right-handed 310
Helix 35	AD8	E	165	176	Right-handed alpha
Helix 36	AD9	E	177	179	Right-handed 310
Helix 37	AE1	E	183	197	Right-handed alpha
Helix 38	AE2	E	225	233	Right-handed 310
Helix 39	AE3	F	21	30	Right-handed alpha
Helix 40	AE4	F	31	34	Right-handed 310
Helix 41	AE5	F	81	104	Right-handed alpha
Helix 42	AE6	F	108	122	Right-handed alpha
Helix 43	AE7	F	123	125	Right-handed 310
Helix 44	AE8	F	169	178	Right-handed alpha
Helix 45	AE9	F	181	185	Right-handed 310
Helix 46	AF1	F	186	202	Right-handed alpha
Helix 47	AF2	F	220	222	Right-handed 310
Helix 48	AF3	F	229	244	Right-handed alpha
Helix 49	AF4	G	22	31	Right-handed alpha
Helix 50	AF5	G	32	35	Right-handed 310
Helix 51	AF6	G	62	66	Right-handed 310
Helix 52	AF7	G	83	106	Right-handed alpha
Helix 53	AF8	G	110	125	Right-handed alpha
Helix 54	AF9	G	171	185	Right-handed alpha
Helix 55	AG1	G	190	207	Right-handed alpha
Helix 56	AG2	G	231	244	Right-handed alpha
Helix 57	AG3	H	48	54	Right-handed alpha
Helix 58	AG4	H	54	71	Right-handed alpha
Helix 59	AG5	H	73	87	Right-handed alpha
Helix 60	AG6	H	99	107	Right-handed alpha
Helix 61	AG7	H	113	118	Right-handed alpha
Helix 62	AG8	H	120	124	Right-handed 310
Helix 63	AG9	H	129	139	Right-handed alpha
Helix 64	AH1	I	32	45	Right-handed alpha
Helix 65	AH2	I	61	65	Right-handed 310
Helix 66	AH3	I	76	87	Right-handed alpha
Helix 67	AH4	I	145	154	Right-handed alpha
Helix 68	AH5	I	173	175	Right-handed 310
Helix 69	AH6	I	180	184	Right-handed 310
Helix 70	AH7	I	214	226	Right-handed alpha
Helix 71	AH8	I	243	249	Right-handed alpha
Helix 72	AH9	I	250	256	Right-handed 310
Helix 73	AI1	I	265	279	Right-handed alpha
Helix 74	AI2	J	23	25	Right-handed 310
Helix 75	AI3	J	26	40	Right-handed alpha
Helix 76	AI4	J	99	114	Right-handed alpha
Helix 77	AI5	J	130	135	Right-handed alpha
Helix 78	AI6	J	151	158	Right-handed alpha
Helix 79	AI7	J	186	198	Right-handed alpha
Helix 80	AI8	J	213	229	Right-handed alpha
Helix 81	AI9	K	18	33	Right-handed alpha
Helix 82	AJ1	K	91	114	Right-handed alpha
Helix 83	AJ2	K	118	133	Right-handed alpha
Helix 84	AJ3	K	174	184	Right-handed alpha
Helix 85	AJ4	K	190	204	Right-handed alpha
Helix 86	AJ5	K	224	226	Right-handed 310
Helix 87	AJ6	L	56	79	Right-handed alpha
Helix 88	AJ7	L	83	98	Right-handed alpha
Helix 89	AJ8	L	146	153	Right-handed alpha
Helix 90	AJ9	L	159	175	Right-handed alpha
Helix 91	AK1	M	52	72	Right-handed alpha
Helix 92	AK2	M	76	93	Right-handed alpha
Helix 93	AK3	M	135	146	Right-handed alpha
Helix 94	AK4	M	152	171	Right-handed alpha
Helix 95	AK5	N	3	8	Right-handed alpha
Helix 96	AK6	N	107	130	Right-handed alpha
Helix 97	AK7	N	134	149	Right-handed alpha
Helix 98	AK8	N	190	201	Right-handed alpha
Helix 99	AK9	N	207	223	Right-handed alpha
Helix 100	AL1	O	85	108	Right-handed alpha
Helix 101	AL2	O	112	127	Right-handed alpha
Helix 102	AL3	O	195	211	Right-handed alpha

There are 28 sheets in PDB entry 8QZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	43	49	anti-parallel
Strand 4	A	208	214	anti-parallel
Strand 5	A	217	220	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	132	139	anti-parallel
Strand 4	A	144	149	anti-parallel
Strand 5	A	155	157	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	211	219	anti-parallel
Strand 5	B	222	227	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	72	78	anti-parallel
Strand 3	B	132	140	anti-parallel
Strand 4	B	144	150	anti-parallel
Strand 5	B	156	158	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	32	36	anti-parallel
Strand 3	C	40	46	anti-parallel
Strand 4	C	206	212	anti-parallel
Strand 5	C	217	219	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	69	75	anti-parallel
Strand 3	C	129	136	anti-parallel
Strand 4	C	142	147	anti-parallel
Strand 5	C	153	155	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	37	42	anti-parallel
Strand 3	D	45	51	anti-parallel
Strand 4	D	215	220	anti-parallel
Strand 5	D	226	228	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	144	145	anti-parallel
Strand 3	D	152	153	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	44	49	anti-parallel
Strand 4	E	210	215	anti-parallel
Strand 5	E	222	224	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	65	first strand
Strand 2	E	70	76	anti-parallel
Strand 3	E	130	138	anti-parallel
Strand 4	E	141	147	anti-parallel
Strand 5	E	153	154	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	166	first strand
Strand 2	F	37	42	anti-parallel
Strand 3	F	45	53	anti-parallel
Strand 4	F	210	218	anti-parallel
Strand 5	F	226	227	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	74	80	anti-parallel
Strand 3	F	134	142	anti-parallel
Strand 4	F	146	152	anti-parallel
Strand 5	F	158	160	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	169	first strand
Strand 2	G	38	43	anti-parallel
Strand 3	G	47	53	anti-parallel
Strand 4	G	215	221	anti-parallel
Strand 5	G	228	229	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	73	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	136	144	anti-parallel
Strand 4	G	148	154	anti-parallel
Strand 5	G	160	163	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	50	first strand
Strand 2	I	93	100	anti-parallel
Strand 3	I	120	126	anti-parallel
Strand 4	I	132	137	anti-parallel
Strand 5	I	70	75	parallel
Strand 6	I	164	171	parallel
Strand 7	I	230	237	parallel
Strand 8	I	188	193	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	212	213	first strand
Strand 2	J	55	57	anti-parallel
Strand 3	J	72	73	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1	4	first strand
Strand 2	J	42	48	anti-parallel
Strand 3	J	75	79	anti-parallel
Strand 4	J	85	90	anti-parallel
Strand 5	J	16	20	parallel
Strand 6	J	117	121	parallel
Strand 7	J	201	208	parallel
Strand 8	J	124	125	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1	4	first strand
Strand 2	J	42	48	anti-parallel
Strand 3	J	75	79	anti-parallel
Strand 4	J	85	90	anti-parallel
Strand 5	J	16	20	parallel
Strand 6	J	117	121	parallel
Strand 7	J	201	208	parallel
Strand 8	J	139	143	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	167	170	first strand
Strand 2	K	46	51	anti-parallel
Strand 3	K	54	60	anti-parallel
Strand 4	K	216	222	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	78	81	first strand
Strand 2	K	84	90	anti-parallel
Strand 3	K	139	146	anti-parallel
Strand 4	K	151	156	anti-parallel
Strand 5	K	162	164	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	252	259	first strand
Strand 2	L	195	202	anti-parallel
Strand 3	L	185	190	anti-parallel
Strand 4	L	20	24	anti-parallel
Strand 5	L	10	15	anti-parallel
Strand 6	L	136	140	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	44	first strand
Strand 2	L	49	52	anti-parallel
Strand 3	L	108	112	anti-parallel
Strand 4	L	119	123	anti-parallel
Strand 5	L	131	132	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	132	first strand
Strand 2	M	4	8	anti-parallel
Strand 3	M	13	17	anti-parallel
Strand 4	M	179	184	anti-parallel
Strand 5	M	187	190	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	37	first strand
Strand 2	M	42	48	anti-parallel
Strand 3	M	100	107	anti-parallel
Strand 4	M	113	118	anti-parallel
Strand 5	M	124	126	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	184	187	first strand
Strand 2	N	62	67	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	234	239	anti-parallel
Strand 5	N	242	245	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	93	94	first strand
Strand 2	N	100	103	anti-parallel
Strand 3	N	157	163	anti-parallel
Strand 4	N	168	174	anti-parallel
Strand 5	N	179	181	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	163	164	first strand
Strand 2	O	40	43	anti-parallel
Strand 3	O	49	53	anti-parallel
Strand 4	O	222	226	anti-parallel
Strand 5	O	234	235	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	70	75	first strand
Strand 2	O	78	82	anti-parallel
Strand 3	O	137	141	anti-parallel
Strand 4	O	147	151	anti-parallel
Strand 5	O	159	161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QZ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZ9