Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QZI entry

There are 6 chains in PDB entry 8QZI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3LEU 227
B
 VAL 3LEU 227
C
 VAL 3LEU 227
D
 VAL 3LEU 227
E
 GLN 2061ASP 2146
F
 ILE 2058MSE 2145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8QZI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed 310
Helix 2
AA2
A
12 16Right-handed 310
Helix 3
AA3
A
37 42Right-handed 310
Helix 4
AA4
A
45 66Right-handed alpha
Helix 5
AA5
A
106 108Right-handed 310
Helix 6
AA6
A
125 130Right-handed alpha
Helix 7
AA7
A
133 138Right-handed alpha
Helix 8
AA8
A
139 141Right-handed 310
Helix 9
AA9
A
147 168Right-handed alpha
Helix 10
AB1
B
5 11Right-handed 310
Helix 11
AB2
B
38 42Right-handed 310
Helix 12
AB3
B
45 66Right-handed alpha
Helix 13
AB4
B
76 80Right-handed 310
Helix 14
AB5
B
125 130Right-handed alpha
Helix 15
AB6
B
131 138Right-handed alpha
Helix 16
AB7
B
139 141Right-handed 310
Helix 17
AB8
B
147 168Right-handed alpha
Helix 18
AB9
B
172 174Right-handed 310
Helix 19
AC1
C
5 11Right-handed 310
Helix 20
AC2
C
37 42Right-handed 310
Helix 21
AC3
C
45 66Right-handed alpha
Helix 22
AC4
C
106 108Right-handed 310
Helix 23
AC5
C
124 130Right-handed alpha
Helix 24
AC6
C
131 138Right-handed alpha
Helix 25
AC7
C
139 142Right-handed 310
Helix 26
AC8
C
147 168Right-handed alpha
Helix 27
AC9
C
172 174Right-handed 310
Helix 28
AD1
D
6 11Right-handed 310
Helix 29
AD2
D
34 42Right-handed 310
Helix 30
AD3
D
45 66Right-handed alpha
Helix 31
AD4
D
124 130Right-handed alpha
Helix 32
AD5
D
131 142Right-handed alpha
Helix 33
AD6
D
147 168Right-handed alpha
Helix 34
AD7
E
2070 2086Right-handed alpha
Helix 35
AD8
E
2098 2102Right-handed 310
Helix 36
AD9
E
2104 2120Right-handed alpha
Helix 37
AE1
E
2126 2131Right-handed alpha
Helix 38
AE2
E
2133 2146Right-handed alpha
Helix 39
AE3
F
2071 2087Right-handed alpha
Helix 40
AE4
F
2104 2119Right-handed alpha
Helix 41
AE5
F
2126 2130Right-handed 310
Helix 42
AE6
F
2138 2145Right-handed alpha
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There are 8 sheets in PDB entry 8QZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
87 94anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
209 217anti-parallel
Strand 4
A
188 195anti-parallel
Strand 5
A
176 182anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 24first strand
Strand 2
B
97 104anti-parallel
Strand 3
B
87 94anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 117first strand
Strand 2
B
220 226anti-parallel
Strand 3
B
209 217anti-parallel
Strand 4
B
188 195anti-parallel
Strand 5
B
176 180anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 24first strand
Strand 2
C
97 104anti-parallel
Strand 3
C
87 94anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 117first strand
Strand 2
C
220 226anti-parallel
Strand 3
C
209 217anti-parallel
Strand 4
C
188 195anti-parallel
Strand 5
C
176 182anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 24first strand
Strand 2
D
97 104anti-parallel
Strand 3
D
87 94anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 117first strand
Strand 2
D
220 226anti-parallel
Strand 3
D
209 217anti-parallel
Strand 4
D
188 195anti-parallel
Strand 5
D
176 182anti-parallel
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