Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QZP entry

There are 8 chains in PDB entry 8QZP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 95	ILE 513
B	LYS 95	LEU 508
C	LYS 95	GLY 510
D	LYS 70	GLY 510
E	ASN 103	LEU 508
F	PRO 106	ARG 508
G	PRO 106	ARG 508
H	PRO 106	ARG 508

There are181 helices in PDB entry 8QZP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	128	133	Right-handed alpha
Helix 2	AA2	A	136	147	Right-handed alpha
Helix 3	AA3	A	151	166	Right-handed alpha
Helix 4	AA4	A	169	179	Right-handed alpha
Helix 5	AA5	A	184	199	Right-handed alpha
Helix 6	AA6	A	204	208	Right-handed 310
Helix 7	AA7	A	211	214	Right-handed 310
Helix 8	AA8	A	215	243	Right-handed alpha
Helix 9	AA9	A	254	265	Right-handed alpha
Helix 10	AB1	A	274	288	Right-handed alpha
Helix 11	AB2	A	294	306	Right-handed alpha
Helix 12	AB3	A	309	322	Right-handed alpha
Helix 13	AB4	A	323	327	Right-handed 310
Helix 14	AB5	A	329	341	Right-handed alpha
Helix 15	AB6	A	346	355	Right-handed alpha
Helix 16	AB7	A	372	390	Right-handed alpha
Helix 17	AB8	A	392	408	Right-handed alpha
Helix 18	AB9	A	408	413	Right-handed alpha
Helix 19	AC1	A	419	432	Right-handed alpha
Helix 20	AC2	A	434	436	Right-handed 310
Helix 21	AC3	A	437	442	Right-handed alpha
Helix 22	AC4	A	444	446	Right-handed 310
Helix 23	AC5	A	447	460	Right-handed alpha
Helix 24	AC6	A	482	486	Right-handed 310
Helix 25	AC7	B	128	135	Right-handed alpha
Helix 26	AC8	B	136	146	Right-handed alpha
Helix 27	AC9	B	151	165	Right-handed alpha
Helix 28	AD1	B	169	179	Right-handed alpha
Helix 29	AD2	B	184	199	Right-handed alpha
Helix 30	AD3	B	200	208	Right-handed 310
Helix 31	AD4	B	215	243	Right-handed alpha
Helix 32	AD5	B	254	264	Right-handed alpha
Helix 33	AD6	B	274	288	Right-handed alpha
Helix 34	AD7	B	294	306	Right-handed alpha
Helix 35	AD8	B	309	320	Right-handed alpha
Helix 36	AD9	B	321	327	Right-handed 310
Helix 37	AE1	B	329	340	Right-handed alpha
Helix 38	AE2	B	342	344	Right-handed 310
Helix 39	AE3	B	345	355	Right-handed alpha
Helix 40	AE4	B	372	390	Right-handed alpha
Helix 41	AE5	B	392	408	Right-handed alpha
Helix 42	AE6	B	408	413	Right-handed alpha
Helix 43	AE7	B	419	432	Right-handed alpha
Helix 44	AE8	B	437	459	Right-handed alpha
Helix 45	AE9	B	503	507	Right-handed 310
Helix 46	AF1	C	128	135	Right-handed alpha
Helix 47	AF2	C	136	145	Right-handed alpha
Helix 48	AF3	C	151	165	Right-handed alpha
Helix 49	AF4	C	169	178	Right-handed alpha
Helix 50	AF5	C	184	200	Right-handed alpha
Helix 51	AF6	C	209	214	Right-handed 310
Helix 52	AF7	C	215	242	Right-handed alpha
Helix 53	AF8	C	254	264	Right-handed alpha
Helix 54	AF9	C	274	287	Right-handed alpha
Helix 55	AG1	C	294	306	Right-handed alpha
Helix 56	AG2	C	309	322	Right-handed alpha
Helix 57	AG3	C	329	341	Right-handed alpha
Helix 58	AG4	C	342	344	Right-handed 310
Helix 59	AG5	C	345	355	Right-handed alpha
Helix 60	AG6	C	372	389	Right-handed alpha
Helix 61	AG7	C	392	408	Right-handed alpha
Helix 62	AG8	C	408	414	Right-handed alpha
Helix 63	AG9	C	419	431	Right-handed alpha
Helix 64	AH1	C	434	443	Right-handed 310
Helix 65	AH2	C	444	445	Right-handed 310
Helix 66	AH3	C	446	458	Right-handed alpha
Helix 67	AH4	C	502	507	Right-handed alpha
Helix 68	AH5	D	78	82	Right-handed 310
Helix 69	AH6	D	127	135	Right-handed alpha
Helix 70	AH7	D	136	147	Right-handed alpha
Helix 71	AH8	D	151	165	Right-handed alpha
Helix 72	AH9	D	169	179	Right-handed alpha
Helix 73	AI1	D	184	200	Right-handed alpha
Helix 74	AI2	D	201	204	Right-handed 310
Helix 75	AI3	D	211	214	Right-handed 310
Helix 76	AI4	D	215	242	Right-handed alpha
Helix 77	AI5	D	254	264	Right-handed alpha
Helix 78	AI6	D	274	288	Right-handed alpha
Helix 79	AI7	D	294	305	Right-handed alpha
Helix 80	AI8	D	309	321	Right-handed alpha
Helix 81	AI9	D	329	341	Right-handed alpha
Helix 82	AJ1	D	345	355	Right-handed alpha
Helix 83	AJ2	D	372	390	Right-handed alpha
Helix 84	AJ3	D	392	407	Right-handed alpha
Helix 85	AJ4	D	408	413	Right-handed alpha
Helix 86	AJ5	D	419	431	Right-handed alpha
Helix 87	AJ6	D	434	436	Right-handed 310
Helix 88	AJ7	D	437	442	Right-handed alpha
Helix 89	AJ8	D	443	460	Right-handed alpha
Helix 90	AJ9	D	482	486	Right-handed 310
Helix 91	AK1	D	501	509	Right-handed alpha
Helix 92	AK2	E	128	135	Right-handed alpha
Helix 93	AK3	E	136	147	Right-handed alpha
Helix 94	AK4	E	151	164	Right-handed alpha
Helix 95	AK5	E	169	178	Right-handed alpha
Helix 96	AK6	E	184	200	Right-handed alpha
Helix 97	AK7	E	201	204	Right-handed 310
Helix 98	AK8	E	211	214	Right-handed 310
Helix 99	AK9	E	215	242	Right-handed alpha
Helix 100	AL1	E	254	264	Right-handed alpha
Helix 101	AL2	E	274	288	Right-handed alpha
Helix 102	AL3	E	294	306	Right-handed alpha
Helix 103	AL4	E	309	323	Right-handed alpha
Helix 104	AL5	E	323	328	Right-handed alpha
Helix 105	AL6	E	329	341	Right-handed alpha
Helix 106	AL7	E	342	345	Right-handed 310
Helix 107	AL8	E	346	355	Right-handed alpha
Helix 108	AL9	E	365	369	Right-handed 310
Helix 109	AM1	E	372	390	Right-handed alpha
Helix 110	AM2	E	392	408	Right-handed alpha
Helix 111	AM3	E	408	414	Right-handed alpha
Helix 112	AM4	E	419	431	Right-handed alpha
Helix 113	AM5	E	434	436	Right-handed 310
Helix 114	AM6	E	437	442	Right-handed alpha
Helix 115	AM7	E	445	459	Right-handed alpha
Helix 116	AM8	E	502	507	Right-handed alpha
Helix 117	AM9	F	128	135	Right-handed alpha
Helix 118	AN1	F	136	147	Right-handed alpha
Helix 119	AN2	F	151	165	Right-handed alpha
Helix 120	AN3	F	170	179	Right-handed alpha
Helix 121	AN4	F	184	199	Right-handed alpha
Helix 122	AN5	F	200	203	Right-handed 310
Helix 123	AN6	F	204	209	Right-handed alpha
Helix 124	AN7	F	210	214	Right-handed 310
Helix 125	AN8	F	215	242	Right-handed alpha
Helix 126	AN9	F	254	264	Right-handed alpha
Helix 127	AO1	F	274	288	Right-handed alpha
Helix 128	AO2	F	294	305	Right-handed alpha
Helix 129	AO3	F	309	320	Right-handed alpha
Helix 130	AO4	F	321	323	Right-handed 310
Helix 131	AO5	F	328	341	Right-handed alpha
Helix 132	AO6	F	342	344	Right-handed 310
Helix 133	AO7	F	345	355	Right-handed alpha
Helix 134	AO8	F	372	390	Right-handed alpha
Helix 135	AO9	F	392	408	Right-handed alpha
Helix 136	AP1	F	408	415	Right-handed alpha
Helix 137	AP2	F	419	431	Right-handed alpha
Helix 138	AP3	F	434	436	Right-handed 310
Helix 139	AP4	F	437	460	Right-handed alpha
Helix 140	AP5	F	503	508	Right-handed alpha
Helix 141	AP6	G	129	131	Right-handed 310
Helix 142	AP7	G	136	147	Right-handed alpha
Helix 143	AP8	G	151	165	Right-handed alpha
Helix 144	AP9	G	171	177	Right-handed alpha
Helix 145	AQ1	G	184	197	Right-handed alpha
Helix 146	AQ2	G	215	229	Right-handed alpha
Helix 147	AQ3	G	229	234	Right-handed alpha
Helix 148	AQ4	G	237	243	Right-handed alpha
Helix 149	AQ5	G	254	264	Right-handed alpha
Helix 150	AQ6	G	276	288	Right-handed alpha
Helix 151	AQ7	G	295	307	Right-handed alpha
Helix 152	AQ8	G	310	322	Right-handed alpha
Helix 153	AQ9	G	330	340	Right-handed alpha
Helix 154	AR1	G	342	344	Right-handed 310
Helix 155	AR2	G	345	355	Right-handed alpha
Helix 156	AR3	G	372	390	Right-handed alpha
Helix 157	AR4	G	392	406	Right-handed alpha
Helix 158	AR5	G	408	414	Right-handed alpha
Helix 159	AR6	G	419	431	Right-handed alpha
Helix 160	AR7	G	439	458	Right-handed alpha
Helix 161	AR8	G	482	486	Right-handed 310
Helix 162	AR9	G	502	508	Right-handed alpha
Helix 163	AS1	H	127	134	Right-handed alpha
Helix 164	AS2	H	136	146	Right-handed alpha
Helix 165	AS3	H	151	165	Right-handed alpha
Helix 166	AS4	H	171	176	Right-handed 310
Helix 167	AS5	H	184	200	Right-handed alpha
Helix 168	AS6	H	215	230	Right-handed alpha
Helix 169	AS7	H	230	240	Right-handed alpha
Helix 170	AS8	H	254	262	Right-handed alpha
Helix 171	AS9	H	275	288	Right-handed alpha
Helix 172	AT1	H	296	302	Right-handed alpha
Helix 173	AT2	H	302	307	Right-handed alpha
Helix 174	AT3	H	310	321	Right-handed alpha
Helix 175	AT4	H	332	338	Right-handed alpha
Helix 176	AT5	H	345	355	Right-handed alpha
Helix 177	AT6	H	372	387	Right-handed alpha
Helix 178	AT7	H	392	405	Right-handed alpha
Helix 179	AT8	H	408	414	Right-handed alpha
Helix 180	AT9	H	419	432	Right-handed alpha
Helix 181	AU1	H	442	460	Right-handed alpha

There are 13 sheets in PDB entry 8QZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	B	470	472	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	D	96	97	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	D	471	472	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	115	first strand
Strand 2	C	120	123	anti-parallel
Strand 3	C	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	472	first strand
Strand 2	D	108	109	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	115	first strand
Strand 2	D	120	123	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	123	first strand
Strand 2	E	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	115	first strand
Strand 2	F	120	123	anti-parallel
Strand 3	F	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	123	first strand
Strand 2	G	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	471	472	first strand
Strand 2	H	108	109	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	113	114	first strand
Strand 2	H	121	122	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QZP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZP