Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QZW entry

There are 2 chains in PDB entry 8QZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 175
A
 LEU 177GLU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 8QZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
45 47Right-handed 310
Helix 4
AA4
A
48 67Right-handed alpha
Helix 5
AA5
A
103 109Right-handed alpha
Helix 6
AA6
A
110 121Right-handed alpha
Helix 7
AA7
A
130 143Right-handed alpha
Helix 8
AA8
A
153 160Right-handed alpha
Helix 9
AA9
A
172 197Right-handed alpha
Helix 10
AB1
A
201 214Right-handed alpha
Helix 11
AB2
A
218 226Right-handed alpha
Helix 12
AB3
A
238 251Right-handed alpha
Helix 13
AB4
A
258 268Right-handed alpha
Helix 14
AB5
A
283 295Right-handed alpha
Helix 15
AB6
A
309 313Right-handed 310
Helix 16
AB7
A
319 326Right-handed alpha
Helix 17
AB8
A
341 344Right-handed 310
Helix 18
AB9
A
345 353Right-handed alpha
Helix 19
AC1
A
353 360Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8QZW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
126 129parallel
Strand 3
A
96 102parallel
Strand 4
A
274 280parallel
Strand 5
A
301 306parallel
Strand 6
A
336 339parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
168 171anti-parallel
Strand 3
A
162 165anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il