Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QZX entry

There are 5 chains in PDB entry 8QZX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 23	GLU 363
B	THR 24	GLU 363
C	LEU 26	GLU 363
D	THR 24	GLU 363
E	VAL 29	LYS 164

There are 70 helices in PDB entry 8QZX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	47	Right-handed alpha
Helix 2	AA2	A	52	69	Right-handed alpha
Helix 3	AA3	A	107	111	Right-handed 310
Helix 4	AA4	A	112	114	Right-handed 310
Helix 5	AA5	A	115	124	Right-handed alpha
Helix 6	AA6	A	133	146	Right-handed alpha
Helix 7	AA7	A	156	163	Right-handed alpha
Helix 8	AA8	A	174	200	Right-handed alpha
Helix 9	AA9	A	204	217	Right-handed alpha
Helix 10	AB1	A	221	229	Right-handed alpha
Helix 11	AB2	A	241	254	Right-handed alpha
Helix 12	AB3	A	260	274	Right-handed alpha
Helix 13	AB4	A	286	296	Right-handed alpha
Helix 14	AB5	A	312	316	Right-handed 310
Helix 15	AB6	A	322	329	Right-handed alpha
Helix 16	AB7	A	344	355	Right-handed alpha
Helix 17	AB8	A	356	363	Right-handed alpha
Helix 18	AB9	B	39	46	Right-handed alpha
Helix 19	AC1	B	47	50	Right-handed 310
Helix 20	AC2	B	51	69	Right-handed alpha
Helix 21	AC3	B	106	112	Right-handed alpha
Helix 22	AC4	B	114	124	Right-handed alpha
Helix 23	AC5	B	133	146	Right-handed alpha
Helix 24	AC6	B	156	163	Right-handed alpha
Helix 25	AC7	B	175	200	Right-handed alpha
Helix 26	AC8	B	204	217	Right-handed alpha
Helix 27	AC9	B	221	229	Right-handed alpha
Helix 28	AD1	B	241	254	Right-handed alpha
Helix 29	AD2	B	261	271	Right-handed alpha
Helix 30	AD3	B	286	297	Right-handed alpha
Helix 31	AD4	B	298	300	Right-handed 310
Helix 32	AD5	B	312	316	Right-handed 310
Helix 33	AD6	B	322	330	Right-handed alpha
Helix 34	AD7	B	344	355	Right-handed alpha
Helix 35	AD8	B	356	363	Right-handed alpha
Helix 36	AD9	C	39	47	Right-handed alpha
Helix 37	AE1	C	48	51	Right-handed 310
Helix 38	AE2	C	52	69	Right-handed alpha
Helix 39	AE3	C	106	112	Right-handed alpha
Helix 40	AE4	C	114	124	Right-handed alpha
Helix 41	AE5	C	133	146	Right-handed alpha
Helix 42	AE6	C	156	163	Right-handed alpha
Helix 43	AE7	C	174	200	Right-handed alpha
Helix 44	AE8	C	204	215	Right-handed alpha
Helix 45	AE9	C	221	229	Right-handed alpha
Helix 46	AF1	C	241	254	Right-handed alpha
Helix 47	AF2	C	260	271	Right-handed alpha
Helix 48	AF3	C	286	297	Right-handed alpha
Helix 49	AF4	C	312	316	Right-handed 310
Helix 50	AF5	C	322	329	Right-handed alpha
Helix 51	AF6	C	344	355	Right-handed alpha
Helix 52	AF7	C	356	363	Right-handed alpha
Helix 53	AF8	D	39	47	Right-handed alpha
Helix 54	AF9	D	48	50	Right-handed 310
Helix 55	AG1	D	51	69	Right-handed alpha
Helix 56	AG2	D	106	112	Right-handed alpha
Helix 57	AG3	D	114	124	Right-handed alpha
Helix 58	AG4	D	133	146	Right-handed alpha
Helix 59	AG5	D	156	163	Right-handed alpha
Helix 60	AG6	D	175	200	Right-handed alpha
Helix 61	AG7	D	204	217	Right-handed alpha
Helix 62	AG8	D	221	229	Right-handed alpha
Helix 63	AG9	D	241	252	Right-handed alpha
Helix 64	AH1	D	260	271	Right-handed alpha
Helix 65	AH2	D	286	298	Right-handed alpha
Helix 66	AH3	D	312	316	Right-handed 310
Helix 67	AH4	D	322	330	Right-handed alpha
Helix 68	AH5	D	344	356	Right-handed alpha
Helix 69	AH6	D	356	363	Right-handed alpha
Helix 70	AH7	E	127	140	Right-handed alpha

There are 10 sheets in PDB entry 8QZX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	129	132	parallel
Strand 3	A	99	105	parallel
Strand 4	A	277	283	parallel
Strand 5	A	304	308	parallel
Strand 6	A	339	341	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	100	104	parallel
Strand 3	B	278	283	parallel
Strand 4	B	304	308	parallel
Strand 5	B	338	341	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	171	174	anti-parallel
Strand 3	B	165	168	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	129	132	parallel
Strand 3	C	99	105	parallel
Strand 4	C	277	283	parallel
Strand 5	C	304	309	parallel
Strand 6	C	339	342	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	171	172	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	234	first strand
Strand 2	D	129	132	parallel
Strand 3	D	99	105	parallel
Strand 4	D	277	283	parallel
Strand 5	D	304	308	parallel
Strand 6	D	339	341	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	171	174	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	40	first strand
Strand 2	E	43	52	anti-parallel
Strand 3	E	63	69	anti-parallel
Strand 4	E	75	80	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	147	153	anti-parallel
Strand 3	E	95	101	anti-parallel
Strand 4	E	106	109	anti-parallel
Strand 5	E	115	116	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	147	153	anti-parallel
Strand 3	E	156	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QZX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZX