Analysis of interatomic Contacts of Structural Units in PDB entry:
8QZZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QZZ entry

There are 3 chains in PDB entry 8QZZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10ASP 471
B
 THR 185ASN 297
C
 SER 426TYR 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8QZZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 28Right-handed 310
Helix 2
AA2
A
32 37Right-handed alpha
Helix 3
AA3
A
53 63Right-handed alpha
Helix 4
AA4
A
142 148Right-handed alpha
Helix 5
AA5
A
167 181Right-handed alpha
Helix 6
AA6
A
196 212Right-handed alpha
Helix 7
AA7
A
231 242Right-handed alpha
Helix 8
AA8
A
270 274Right-handed 310
Helix 9
AA9
A
344 349Right-handed alpha
Helix 10
AB1
A
350 352Right-handed 310
Helix 11
AB2
A
446 450Right-handed 310
Helix 12
AB3
B
203 218Right-handed alpha
Helix 13
AB4
B
243 265Right-handed alpha
Helix 14
AB5
B
279 296Right-handed alpha
Helix 15
AB6
C
427 432Right-handed alpha
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There are 6 sheets in PDB entry 8QZZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
82 91anti-parallel
Strand 3
A
123 134anti-parallel
Strand 4
A
112 114anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
82 91anti-parallel
Strand 3
A
123 134anti-parallel
Strand 4
A
42 47parallel
Strand 5
A
154 160parallel
Strand 6
A
185 190parallel
Strand 7
A
221 223parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
309 323anti-parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
277 285anti-parallel
Strand 5
A
255 263anti-parallel
Strand 6
A
357 360anti-parallel
Strand 7
A
293 303anti-parallel
Strand 8
A
309 323anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
330 331anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
433 434first strand
Strand 2
A
367 378anti-parallel
Strand 3
A
452 465anti-parallel
Strand 4
A
440 445anti-parallel
Strand 5
A
403 408anti-parallel
Strand 6
A
411 420anti-parallel
Strand 7
A
424 434anti-parallel
Strand 8
A
367 378anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 231first strand
Strand 2
B
234 241anti-parallel
Strand 3
B
189 198anti-parallel
Strand 4
B
268 277anti-parallel
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