Analysis of interatomic Contacts of Structural Units in PDB entry:
8R04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R04 entry

There are 8 chains in PDB entry 8R04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 11	LYS 199
B	VAL 11	LYS 199
C	VAL 11	LYS 199
D	VAL 11	LYS 199
E	VAL 11	LYS 199
F	VAL 11	LYS 199
G	VAL 11	ARG 200
H	VAL 11	ILE 51

There are 98 helices in PDB entry 8R04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	34	Right-handed alpha
Helix 2	AA2	A	44	62	Right-handed alpha
Helix 3	AA3	A	77	91	Right-handed alpha
Helix 4	AA4	A	105	113	Right-handed alpha
Helix 5	AA5	A	140	166	Right-handed alpha
Helix 6	AA6	A	168	176	Right-handed alpha
Helix 7	AA7	A	183	191	Right-handed alpha
Helix 8	AA8	B	26	34	Right-handed alpha
Helix 9	AA9	B	44	62	Right-handed alpha
Helix 10	AB1	B	77	91	Right-handed alpha
Helix 11	AB2	B	105	113	Right-handed alpha
Helix 12	AB3	B	140	166	Right-handed alpha
Helix 13	AB4	B	168	176	Right-handed alpha
Helix 14	AB5	B	183	190	Right-handed alpha
Helix 15	AB6	C	26	33	Right-handed alpha
Helix 16	AB7	C	44	62	Right-handed alpha
Helix 17	AB8	C	77	91	Right-handed alpha
Helix 18	AB9	C	105	113	Right-handed alpha
Helix 19	AC1	C	140	166	Right-handed alpha
Helix 20	AC2	C	168	176	Right-handed alpha
Helix 21	AC3	C	183	191	Right-handed alpha
Helix 22	AC4	D	26	34	Right-handed alpha
Helix 23	AC5	D	44	62	Right-handed alpha
Helix 24	AC6	D	77	91	Right-handed alpha
Helix 25	AC7	D	105	113	Right-handed alpha
Helix 26	AC8	D	140	166	Right-handed alpha
Helix 27	AC9	D	168	176	Right-handed alpha
Helix 28	AD1	D	183	191	Right-handed alpha
Helix 29	AD2	E	26	33	Right-handed alpha
Helix 30	AD3	E	44	62	Right-handed alpha
Helix 31	AD4	E	77	91	Right-handed alpha
Helix 32	AD5	E	105	113	Right-handed alpha
Helix 33	AD6	E	140	166	Right-handed alpha
Helix 34	AD7	E	168	177	Right-handed alpha
Helix 35	AD8	E	183	191	Right-handed alpha
Helix 36	AD9	F	26	34	Right-handed alpha
Helix 37	AE1	F	44	62	Right-handed alpha
Helix 38	AE2	F	77	91	Right-handed alpha
Helix 39	AE3	F	105	113	Right-handed alpha
Helix 40	AE4	F	140	166	Right-handed alpha
Helix 41	AE5	F	168	176	Right-handed alpha
Helix 42	AE6	F	183	191	Right-handed alpha
Helix 43	AE7	G	26	33	Right-handed alpha
Helix 44	AE8	G	44	62	Right-handed alpha
Helix 45	AE9	G	77	91	Right-handed alpha
Helix 46	AF1	G	105	113	Right-handed alpha
Helix 47	AF2	G	140	166	Right-handed alpha
Helix 48	AF3	G	168	176	Right-handed alpha
Helix 49	AF4	G	183	191	Right-handed alpha
Helix 50	AF5	H	26	33	Right-handed alpha
Helix 51	AF6	H	44	62	Right-handed alpha
Helix 52	AF7	H	77	91	Right-handed alpha
Helix 53	AF8	H	105	113	Right-handed alpha
Helix 54	AF9	H	140	166	Right-handed alpha
Helix 55	AG1	H	168	176	Right-handed alpha
Helix 56	AG2	H	183	191	Right-handed alpha
Helix 57	AG3	I	26	34	Right-handed alpha
Helix 58	AG4	I	44	62	Right-handed alpha
Helix 59	AG5	I	77	91	Right-handed alpha
Helix 60	AG6	I	105	113	Right-handed alpha
Helix 61	AG7	I	140	166	Right-handed alpha
Helix 62	AG8	I	168	176	Right-handed alpha
Helix 63	AG9	I	183	191	Right-handed alpha
Helix 64	AH1	J	26	33	Right-handed alpha
Helix 65	AH2	J	44	62	Right-handed alpha
Helix 66	AH3	J	77	91	Right-handed alpha
Helix 67	AH4	J	105	113	Right-handed alpha
Helix 68	AH5	J	140	166	Right-handed alpha
Helix 69	AH6	J	168	176	Right-handed alpha
Helix 70	AH7	J	183	191	Right-handed alpha
Helix 71	AH8	K	26	33	Right-handed alpha
Helix 72	AH9	K	44	62	Right-handed alpha
Helix 73	AI1	K	77	91	Right-handed alpha
Helix 74	AI2	K	105	113	Right-handed alpha
Helix 75	AI3	K	140	166	Right-handed alpha
Helix 76	AI4	K	168	176	Right-handed alpha
Helix 77	AI5	K	183	191	Right-handed alpha
Helix 78	AI6	L	26	33	Right-handed alpha
Helix 79	AI7	L	44	62	Right-handed alpha
Helix 80	AI8	L	77	91	Right-handed alpha
Helix 81	AI9	L	105	113	Right-handed alpha
Helix 82	AJ1	L	140	166	Right-handed alpha
Helix 83	AJ2	L	168	176	Right-handed alpha
Helix 84	AJ3	L	183	191	Right-handed alpha
Helix 85	AJ4	M	26	33	Right-handed alpha
Helix 86	AJ5	M	44	62	Right-handed alpha
Helix 87	AJ6	M	77	91	Right-handed alpha
Helix 88	AJ7	M	105	113	Right-handed alpha
Helix 89	AJ8	M	140	166	Right-handed alpha
Helix 90	AJ9	M	168	176	Right-handed alpha
Helix 91	AK1	M	183	191	Right-handed alpha
Helix 92	AK2	N	26	34	Right-handed alpha
Helix 93	AK3	N	44	62	Right-handed alpha
Helix 94	AK4	N	77	91	Right-handed alpha
Helix 95	AK5	N	105	113	Right-handed alpha
Helix 96	AK6	N	140	166	Right-handed alpha
Helix 97	AK7	N	168	176	Right-handed alpha
Helix 98	AK8	N	183	191	Right-handed alpha

There are 35 sheets in PDB entry 8R04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	67	73	parallel
Strand 3	A	95	104	parallel
Strand 4	A	126	129	parallel
Strand 5	A	180	182	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	67	73	parallel
Strand 3	A	95	104	parallel
Strand 4	A	119	121	parallel
Strand 5	A	195	196	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	139	first strand
Strand 2	M	133	139	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	67	73	parallel
Strand 3	B	95	104	parallel
Strand 4	B	126	129	parallel
Strand 5	B	180	182	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	67	73	parallel
Strand 3	B	95	104	parallel
Strand 4	B	119	121	parallel
Strand 5	B	195	196	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	139	first strand
Strand 2	L	133	139	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	67	73	parallel
Strand 3	C	95	104	parallel
Strand 4	C	126	129	parallel
Strand 5	C	180	182	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	67	73	parallel
Strand 3	C	95	104	parallel
Strand 4	C	119	121	parallel
Strand 5	C	195	196	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	139	first strand
Strand 2	K	133	139	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	67	73	parallel
Strand 3	D	95	104	parallel
Strand 4	D	126	129	parallel
Strand 5	D	180	182	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	67	73	parallel
Strand 3	D	95	104	parallel
Strand 4	D	119	121	parallel
Strand 5	D	195	196	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	139	first strand
Strand 2	J	133	139	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	39	first strand
Strand 2	E	67	73	parallel
Strand 3	E	95	104	parallel
Strand 4	E	126	129	parallel
Strand 5	E	180	182	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	39	first strand
Strand 2	E	67	73	parallel
Strand 3	E	95	104	parallel
Strand 4	E	119	121	parallel
Strand 5	E	195	196	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	139	first strand
Strand 2	I	133	139	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	39	first strand
Strand 2	F	67	73	parallel
Strand 3	F	95	104	parallel
Strand 4	F	126	129	parallel
Strand 5	F	180	182	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	39	first strand
Strand 2	F	67	73	parallel
Strand 3	F	95	104	parallel
Strand 4	F	119	121	parallel
Strand 5	F	195	196	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	139	first strand
Strand 2	H	133	139	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	39	first strand
Strand 2	G	67	73	parallel
Strand 3	G	95	104	parallel
Strand 4	G	126	129	parallel
Strand 5	G	180	182	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	39	first strand
Strand 2	G	67	73	parallel
Strand 3	G	95	104	parallel
Strand 4	G	119	121	parallel
Strand 5	G	195	196	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	139	first strand
Strand 2	N	133	139	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	39	first strand
Strand 2	H	67	73	parallel
Strand 3	H	95	104	parallel
Strand 4	H	126	129	parallel
Strand 5	H	180	182	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	39	first strand
Strand 2	H	67	73	parallel
Strand 3	H	95	104	parallel
Strand 4	H	119	121	parallel
Strand 5	H	195	196	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	36	39	first strand
Strand 2	I	67	73	parallel
Strand 3	I	95	104	parallel
Strand 4	I	126	129	parallel
Strand 5	I	180	182	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	36	39	first strand
Strand 2	I	67	73	parallel
Strand 3	I	95	104	parallel
Strand 4	I	119	121	parallel
Strand 5	I	195	196	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	39	first strand
Strand 2	J	67	73	parallel
Strand 3	J	95	104	parallel
Strand 4	J	126	129	parallel
Strand 5	J	180	182	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	39	first strand
Strand 2	J	67	73	parallel
Strand 3	J	95	104	parallel
Strand 4	J	119	121	parallel
Strand 5	J	195	196	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	39	first strand
Strand 2	K	67	73	parallel
Strand 3	K	95	104	parallel
Strand 4	K	126	129	parallel
Strand 5	K	180	182	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	39	first strand
Strand 2	K	67	73	parallel
Strand 3	K	95	104	parallel
Strand 4	K	119	121	parallel
Strand 5	K	195	196	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	39	first strand
Strand 2	L	67	73	parallel
Strand 3	L	95	104	parallel
Strand 4	L	126	129	parallel
Strand 5	L	180	182	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	39	first strand
Strand 2	L	67	73	parallel
Strand 3	L	95	104	parallel
Strand 4	L	119	121	parallel
Strand 5	L	195	196	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	36	39	first strand
Strand 2	M	67	73	parallel
Strand 3	M	95	104	parallel
Strand 4	M	126	129	parallel
Strand 5	M	180	182	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	36	39	first strand
Strand 2	M	67	73	parallel
Strand 3	M	95	104	parallel
Strand 4	M	119	121	parallel
Strand 5	M	195	196	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	36	39	first strand
Strand 2	N	67	73	parallel
Strand 3	N	95	104	parallel
Strand 4	N	126	129	parallel
Strand 5	N	180	182	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	36	39	first strand
Strand 2	N	67	73	parallel
Strand 3	N	95	104	parallel
Strand 4	N	119	121	parallel
Strand 5	N	195	196	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R04

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R04