Analysis of interatomic Contacts of Structural Units in PDB entry:
8R0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R0C entry

There are 4 chains in PDB entry 8R0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19LEU 280
B
 LEU 14LEU 280
C
 MET 21LEU 280
D
 MET 21LEU 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8R0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 49Right-handed alpha
Helix 2
AA2
A
59 71Right-handed alpha
Helix 3
AA3
A
83 99Right-handed alpha
Helix 4
AA4
A
117 121Right-handed 310
Helix 5
AA5
A
122 152Right-handed alpha
Helix 6
AA6
A
161 165Right-handed 310
Helix 7
AA7
A
171 193Right-handed alpha
Helix 8
AA8
A
225 231Right-handed alpha
Helix 9
AA9
A
239 252Right-handed alpha
Helix 10
AB1
A
253 256Right-handed 310
Helix 11
AB2
A
268 272Right-handed 310
Helix 12
AB3
A
274 280Right-handed alpha
Helix 13
AB4
B
36 49Right-handed alpha
Helix 14
AB5
B
59 71Right-handed alpha
Helix 15
AB6
B
83 99Right-handed alpha
Helix 16
AB7
B
117 121Right-handed 310
Helix 17
AB8
B
122 152Right-handed alpha
Helix 18
AB9
B
161 165Right-handed 310
Helix 19
AC1
B
171 193Right-handed alpha
Helix 20
AC2
B
224 231Right-handed alpha
Helix 21
AC3
B
239 252Right-handed alpha
Helix 22
AC4
B
253 256Right-handed 310
Helix 23
AC5
B
268 272Right-handed 310
Helix 24
AC6
B
276 280Right-handed 310
Helix 25
AC7
C
36 49Right-handed alpha
Helix 26
AC8
C
59 71Right-handed alpha
Helix 27
AC9
C
83 99Right-handed alpha
Helix 28
AD1
C
117 121Right-handed 310
Helix 29
AD2
C
122 152Right-handed alpha
Helix 30
AD3
C
161 165Right-handed 310
Helix 31
AD4
C
171 193Right-handed alpha
Helix 32
AD5
C
194 196Right-handed 310
Helix 33
AD6
C
216 231Right-handed alpha
Helix 34
AD7
C
239 252Right-handed alpha
Helix 35
AD8
C
253 256Right-handed 310
Helix 36
AD9
C
268 272Right-handed 310
Helix 37
AE1
C
274 280Right-handed alpha
Helix 38
AE2
D
36 49Right-handed alpha
Helix 39
AE3
D
59 71Right-handed alpha
Helix 40
AE4
D
83 99Right-handed alpha
Helix 41
AE5
D
117 121Right-handed 310
Helix 42
AE6
D
122 152Right-handed alpha
Helix 43
AE7
D
161 165Right-handed 310
Helix 44
AE8
D
171 193Right-handed alpha
Helix 45
AE9
D
217 231Right-handed alpha
Helix 46
AF1
D
239 252Right-handed alpha
Helix 47
AF2
D
253 256Right-handed 310
Helix 48
AF3
D
268 272Right-handed 310
Helix 49
AF4
D
274 280Right-handed alpha
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There are 5 sheets in PDB entry 8R0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
B
19 20anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
52 57parallel
Strand 3
A
28 32parallel
Strand 4
A
103 106parallel
Strand 5
A
154 159parallel
Strand 6
A
197 204parallel
Strand 7
A
262 265parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 78first strand
Strand 2
B
52 57parallel
Strand 3
B
28 32parallel
Strand 4
B
103 106parallel
Strand 5
B
154 159parallel
Strand 6
B
197 204parallel
Strand 7
B
262 265parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 78first strand
Strand 2
C
52 57parallel
Strand 3
C
28 32parallel
Strand 4
C
103 106parallel
Strand 5
C
155 159parallel
Strand 6
C
198 204parallel
Strand 7
C
262 265parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
74 78first strand
Strand 2
D
52 57parallel
Strand 3
D
28 32parallel
Strand 4
D
103 106parallel
Strand 5
D
154 159parallel
Strand 6
D
197 204parallel
Strand 7
D
262 265parallel
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