Analysis of interatomic Contacts of Structural Units in PDB entry:
8R0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8R0D entry

There is 1 chain in PDB entry 8R0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22VAL 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8R0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 50Right-handed alpha
Helix 2
AA2
A
60 72Right-handed alpha
Helix 3
AA3
A
84 100Right-handed alpha
Helix 4
AA4
A
118 122Right-handed 310
Helix 5
AA5
A
123 153Right-handed alpha
Helix 6
AA6
A
167 171Right-handed 310
Helix 7
AA7
A
172 194Right-handed alpha
Helix 8
AA8
A
216 230Right-handed alpha
Helix 9
AA9
A
232 252Right-handed alpha
Helix 10
AB1
A
253 256Right-handed 310
Helix 11
AB2
A
268 272Right-handed 310
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There are 2 sheets in PDB entry 8R0D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
53 58parallel
Strand 3
A
29 33parallel
Strand 4
A
104 107parallel
Strand 5
A
155 160parallel
Strand 6
A
198 205parallel
Strand 7
A
262 265parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
213 214parallel
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