Analysis of interatomic Contacts of Structural Units in PDB entry:
8R0F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8R0F entry

There are 2 chains in PDB entry 8R0F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 71	ASP 928
A	LYS 71	ASP 849

There are 70 helices in PDB entry 8R0F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	84	100	Right-handed alpha
Helix 2	AA2	B	103	107	Right-handed 310
Helix 3	AA3	B	110	120	Right-handed alpha
Helix 4	AA4	B	193	204	Right-handed alpha
Helix 5	AA5	B	213	215	Right-handed 310
Helix 6	AA6	B	216	221	Right-handed alpha
Helix 7	AA7	B	229	236	Right-handed alpha
Helix 8	AA8	B	236	242	Right-handed alpha
Helix 9	AA9	B	247	263	Right-handed alpha
Helix 10	AB1	B	303	308	Right-handed alpha
Helix 11	AB2	B	337	341	Right-handed alpha
Helix 12	AB3	B	343	350	Right-handed alpha
Helix 13	AB4	B	364	368	Right-handed alpha
Helix 14	AB5	B	384	386	Right-handed 310
Helix 15	AB6	B	392	395	Right-handed 310
Helix 16	AB7	B	447	450	Right-handed 310
Helix 17	AB8	B	451	455	Right-handed 310
Helix 18	AB9	B	462	480	Right-handed alpha
Helix 19	AC1	B	482	495	Right-handed alpha
Helix 20	AC2	B	511	518	Right-handed 310
Helix 21	AC3	B	546	556	Right-handed alpha
Helix 22	AC4	B	592	601	Right-handed alpha
Helix 23	AC5	B	618	645	Right-handed alpha
Helix 24	AC6	B	647	652	Right-handed 310
Helix 25	AC7	B	660	681	Right-handed alpha
Helix 26	AC8	B	684	689	Right-handed alpha
Helix 27	AC9	B	691	696	Right-handed alpha
Helix 28	AD1	B	718	727	Right-handed alpha
Helix 29	AD2	B	731	735	Right-handed 310
Helix 30	AD3	B	769	776	Right-handed alpha
Helix 31	AD4	B	777	788	Right-handed alpha
Helix 32	AD5	B	798	802	Right-handed 310
Helix 33	AD6	B	824	830	Right-handed alpha
Helix 34	AD7	B	831	833	Right-handed 310
Helix 35	AD8	B	850	853	Right-handed 310
Helix 36	AD9	B	885	889	Right-handed 310
Helix 37	AE1	B	904	916	Right-handed alpha
Helix 38	AE2	A	72	77	Right-handed alpha
Helix 39	AE3	A	90	103	Right-handed alpha
Helix 40	AE4	A	105	109	Right-handed 310
Helix 41	AE5	A	110	120	Right-handed alpha
Helix 42	AE6	A	193	205	Right-handed alpha
Helix 43	AE7	A	208	212	Right-handed 310
Helix 44	AE8	A	225	236	Right-handed alpha
Helix 45	AE9	A	236	242	Right-handed alpha
Helix 46	AF1	A	247	263	Right-handed alpha
Helix 47	AF2	A	303	309	Right-handed alpha
Helix 48	AF3	A	337	341	Right-handed alpha
Helix 49	AF4	A	343	350	Right-handed alpha
Helix 50	AF5	A	384	386	Right-handed 310
Helix 51	AF6	A	392	395	Right-handed 310
Helix 52	AF7	A	451	455	Right-handed 310
Helix 53	AF8	A	462	480	Right-handed alpha
Helix 54	AF9	A	482	494	Right-handed alpha
Helix 55	AG1	A	495	497	Right-handed 310
Helix 56	AG2	A	511	518	Right-handed 310
Helix 57	AG3	A	546	556	Right-handed alpha
Helix 58	AG4	A	592	601	Right-handed alpha
Helix 59	AG5	A	618	644	Right-handed alpha
Helix 60	AG6	A	647	652	Right-handed 310
Helix 61	AG7	A	654	659	Right-handed alpha
Helix 62	AG8	A	660	681	Right-handed alpha
Helix 63	AG9	A	691	696	Right-handed alpha
Helix 64	AH1	A	718	727	Right-handed alpha
Helix 65	AH2	A	731	735	Right-handed 310
Helix 66	AH3	A	769	776	Right-handed alpha
Helix 67	AH4	A	777	788	Right-handed alpha
Helix 68	AH5	A	799	803	Right-handed 310
Helix 69	AH6	A	824	830	Right-handed alpha
Helix 70	AH7	A	831	833	Right-handed 310

There are 22 sheets in PDB entry 8R0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	124	130	anti-parallel
Strand 3	B	894	899	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	156	first strand
Strand 2	B	388	391	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	568	572	anti-parallel
Strand 3	B	575	579	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	176	180	parallel
Strand 3	B	586	588	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	244	245	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	369	372	anti-parallel
Strand 3	B	378	379	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	362	first strand
Strand 2	B	283	287	anti-parallel
Strand 3	B	458	461	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	336	first strand
Strand 2	B	404	410	parallel
Strand 3	B	297	302	parallel
Strand 4	B	443	445	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	507	first strand
Strand 2	B	524	526	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	747	749	first strand
Strand 2	B	762	766	anti-parallel
Strand 3	B	876	879	anti-parallel
Strand 4	B	804	807	anti-parallel
Strand 5	B	815	816	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	791	792	first strand
Strand 2	B	855	856	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	144	145	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	388	391	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	568	572	anti-parallel
Strand 3	A	575	579	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	176	180	parallel
Strand 3	A	586	588	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	244	245	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	369	372	anti-parallel
Strand 3	A	378	379	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	459	461	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	336	first strand
Strand 2	A	404	410	parallel
Strand 3	A	297	302	parallel
Strand 4	A	443	445	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	524	526	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	749	first strand
Strand 2	A	762	764	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	806	807	first strand
Strand 2	A	815	816	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8R0F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8R0F